Strain Fitness in Shewanella oneidensis MR-1 around SO3189

Experiment: A22 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.003 mg/ml
3,326,056	-	rfbB	SO3188	0.13	-0.7
3,326,395	-	rfbB	SO3188	0.43	-0.7
3,326,464	+	rfbB	SO3188	0.49	-0.5
3,326,478	+	rfbB	SO3188	0.50	-0.8
3,326,515	-	rfbB	SO3188	0.53	-1.2
3,326,681	+	rfbB	SO3188	0.68	-1.0
3,326,681	+	rfbB	SO3188	0.68	-0.6
3,326,681	+	rfbB	SO3188	0.68	-0.3
3,326,689	-	rfbB	SO3188	0.69	-0.8
3,326,689	-	rfbB	SO3188	0.69	-1.5
3,326,689	-	rfbB	SO3188	0.69	-0.7
3,326,689	-	rfbB	SO3188	0.69	-0.6
3,326,689	-	rfbB	SO3188	0.69	-1.3
3,326,689	-	rfbB	SO3188	0.69	-0.0
3,326,696	+	rfbB	SO3188	0.70	-0.4
3,326,696	+	rfbB	SO3188	0.70	-1.2
3,326,704	-	rfbB	SO3188	0.70	-0.4
3,326,711	+	rfbB	SO3188	0.71	-0.8
3,326,711	+	rfbB	SO3188	0.71	-1.2
3,326,719	-	rfbB	SO3188	0.72	+0.3
3,326,719	-	rfbB	SO3188	0.72	-0.5
3,326,719	-	rfbB	SO3188	0.72	-0.7
3,326,719	-	rfbB	SO3188	0.72	-0.8
3,326,719	-	rfbB	SO3188	0.72	-1.3
3,326,719	-	rfbB	SO3188	0.72	-1.2
3,326,719	-	rfbB	SO3188	0.72	-0.3
3,326,719	-	rfbB	SO3188	0.72	-0.8
3,326,719	-	rfbB	SO3188	0.72	+0.0
3,326,719	-	rfbB	SO3188	0.72	-0.4
3,326,719	-	rfbB	SO3188	0.72	+0.1
3,326,783	+	rfbB	SO3188	0.77	-0.9
3,326,783	+	rfbB	SO3188	0.77	-1.0
3,326,791	-	rfbB	SO3188	0.78	-2.0
3,326,791	-	rfbB	SO3188	0.78	-1.0
3,326,791	-	rfbB	SO3188	0.78	-0.9
3,326,791	-	rfbB	SO3188	0.78	-1.3
3,326,791	-	rfbB	SO3188	0.78	-1.6
3,326,791	-	rfbB	SO3188	0.78	-0.4
3,326,791	-	rfbB	SO3188	0.78	-0.5
3,326,791	-	rfbB	SO3188	0.78	-0.5
3,326,803	+	rfbB	SO3188	0.79	+0.5
3,326,803	+	rfbB	SO3188	0.79	+1.4
3,326,803	+	rfbB	SO3188	0.79	-0.7
3,326,803	+	rfbB	SO3188	0.79	+0.0
3,326,803	-	rfbB	SO3188	0.79	-0.1
3,326,806	+	rfbB	SO3188	0.79	-0.5
3,326,811	-	rfbB	SO3188	0.80	-0.9
3,326,811	-	rfbB	SO3188	0.80	-0.3
3,326,811	-	rfbB	SO3188	0.80	-0.5
3,326,962	+				-1.0
3,326,962	+				-0.9
3,326,962	+				-0.2
3,326,962	+				-2.0
3,326,962	+				-2.5
3,326,962	+				-0.5
3,326,962	+				-0.3
3,326,962	+				-0.4
3,326,970	-				-1.9
3,326,970	-				-1.0
3,326,970	-				-0.1
3,326,970	-				-0.3
3,326,994	-				-1.2
3,327,135	+				-0.7
3,327,135	+				+0.2
3,327,143	-				-0.7
3,327,143	-				-0.4
3,327,143	-				+0.7
3,327,153	-		SO3189	0.11	-0.1
3,327,211	-		SO3189	0.17	-1.5
3,327,211	-		SO3189	0.17	-1.2
3,327,239	-		SO3189	0.19	-2.5
3,327,265	-		SO3189	0.22	-0.7
3,327,275	-		SO3189	0.23	-0.2
3,327,482	+		SO3189	0.43	-2.0
3,327,490	-		SO3189	0.44	-1.3
3,327,500	-		SO3189	0.45	-0.3
3,327,535	-		SO3189	0.48	-1.5
3,327,535	-		SO3189	0.48	-0.3
3,327,538	+		SO3189	0.48	-1.5
3,327,546	-		SO3189	0.49	-1.4
3,327,546	-		SO3189	0.49	-1.0
3,327,604	+		SO3189	0.55	-0.3
3,327,604	+		SO3189	0.55	-0.3
3,327,607	-		SO3189	0.55	-0.1
3,327,612	-		SO3189	0.56	-0.0
3,327,612	-				+0.5
3,327,612	-		SO3189	0.56	-0.8
3,327,624	-		SO3189	0.57	-0.6
3,327,660	+		SO3189	0.60	-0.0
3,327,693	-		SO3189	0.64	+0.3
3,327,750	+		SO3189	0.69	-2.4
3,327,755	+		SO3189	0.70	-1.2
3,327,762	+		SO3189	0.70	-0.8
3,327,762	+		SO3189	0.70	+0.2
3,327,762	+		SO3189	0.70	-1.2
3,327,762	+		SO3189	0.70	-0.1
3,327,762	+		SO3189	0.70	+0.1
3,327,762	+		SO3189	0.70	-1.0
3,327,762	+		SO3189	0.70	-0.6
3,327,763	-		SO3189	0.70	-0.2
3,327,770	-		SO3189	0.71	-0.5
3,327,770	-		SO3189	0.71	-0.2
3,327,770	-		SO3189	0.71	-1.1
3,327,770	-		SO3189	0.71	-1.0
3,327,770	-		SO3189	0.71	-0.5
3,327,770	-		SO3189	0.71	-0.8
3,327,770	-		SO3189	0.71	-0.4
3,327,780	-		SO3189	0.72	-0.7
3,327,788	+		SO3189	0.73	-0.6
3,327,828	-		SO3189	0.77	-0.4
3,327,866	+		SO3189	0.81	-0.6
3,328,085	+				-0.1
3,328,085	+				-0.1
3,328,093	-				-0.5
3,328,093	-				-0.3
3,328,098	+				-0.3
3,328,098	+				-0.7
3,328,159	-				+0.3
3,328,162	+				-1.0
3,328,199	+				-0.4
3,328,230	+				-2.3
3,328,238	-				-1.6
3,328,298	-		SO3190	0.11	-0.9
3,328,342	-		SO3190	0.15	-0.6
3,328,352	-		SO3190	0.16	-0.5
3,328,373	-		SO3190	0.17	-1.0
3,328,413	+		SO3190	0.20	-0.5
3,328,422	+		SO3190	0.21	-1.7
3,328,433	+		SO3190	0.22	-1.2
3,328,433	+		SO3190	0.22	-0.7
3,328,441	-		SO3190	0.23	-0.8
3,328,441	-		SO3190	0.23	-1.7
3,328,441	-		SO3190	0.23	-1.1
3,328,446	-		SO3190	0.23	-1.0
3,328,488	+		SO3190	0.26	+0.3
3,328,546	+		SO3190	0.31	-0.9
3,328,554	-		SO3190	0.31	-1.2
3,328,633	+		SO3190	0.38	+0.7
3,328,641	-		SO3190	0.38	-0.1
3,328,658	+		SO3190	0.40	-1.9
3,328,704	+		SO3190	0.43	+0.3
3,328,722	-		SO3190	0.45	-1.9
3,328,722	-		SO3190	0.45	-1.2
3,328,733	-		SO3190	0.45	-0.1
3,328,768	+		SO3190	0.48	-0.4
3,328,830	-		SO3190	0.53	-0.2
3,328,837	+		SO3190	0.54	-0.3
3,328,845	-		SO3190	0.54	-1.1
3,328,966	+		SO3190	0.64	-0.9
3,328,999	-		SO3190	0.66	-1.5
3,329,018	-		SO3190	0.68	-0.6
3,329,036	+		SO3190	0.69	-0.4