Strain Fitness in Shewanella oneidensis MR-1 around SO2947

Experiment: A22 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.003 mg/ml
3,084,516	+		SO2945	0.84	-0.2
3,084,516	+		SO2945	0.84	-1.8
3,084,516	+		SO2945	0.84	-0.2
3,084,524	-		SO2945	0.85	-0.0
3,084,524	-		SO2945	0.85	-0.4
3,084,584	+				+1.4
3,084,624	-				-0.2
3,084,629	-				-0.4
3,084,676	+				-0.3
3,084,697	+				+0.1
3,084,767	+				-1.2
3,084,782	+		SO2946	0.10	-0.2
3,084,817	+		SO2946	0.15	-0.3
3,084,835	-		SO2946	0.17	-0.7
3,084,845	+		SO2946	0.18	+0.2
3,084,853	-		SO2946	0.19	-0.4
3,084,853	-		SO2946	0.19	-1.0
3,084,857	+		SO2946	0.20	-0.9
3,084,891	-		SO2946	0.24	-0.3
3,084,902	-		SO2946	0.26	-0.9
3,084,902	-		SO2946	0.26	-0.7
3,084,952	-		SO2946	0.32	-0.2
3,084,969	-		SO2946	0.34	-1.1
3,085,094	+		SO2946	0.50	-0.9
3,085,094	+		SO2946	0.50	-1.3
3,085,096	+		SO2946	0.50	-0.9
3,085,154	-		SO2946	0.58	-0.2
3,085,191	+		SO2946	0.62	+0.2
3,085,221	-		SO2946	0.66	-0.2
3,085,234	-		SO2946	0.68	-0.3
3,085,305	+		SO2946	0.77	-0.7
3,085,305	+		SO2946	0.77	-0.6
3,085,305	+		SO2946	0.77	-0.2
3,085,313	-		SO2946	0.78	-0.3
3,085,313	-		SO2946	0.78	-0.5
3,085,402	+		SO2946	0.89	+0.8
3,085,402	+		SO2946	0.89	-0.1
3,085,402	-		SO2946	0.89	-1.4
3,085,445	+				+0.0
3,085,501	+				-0.7
3,085,561	+		SO2947	0.26	-1.2
3,085,569	-		SO2947	0.29	-0.8
3,085,596	-		SO2947	0.38	-0.2
3,085,791	-				+1.5
3,085,918	-		SO2948	0.10	-0.3
3,085,920	-		SO2948	0.10	-0.1
3,085,979	-		SO2948	0.19	+0.0
3,086,080	+		SO2948	0.33	-2.1
3,086,192	+		SO2948	0.48	-0.7
3,086,209	+		SO2948	0.51	-0.2
3,086,219	+		SO2948	0.52	-0.8
3,086,227	-		SO2948	0.53	-0.2
3,086,292	-		SO2948	0.62	+0.1
3,086,372	+		SO2948	0.74	-0.3
3,086,615	+				-0.6
3,086,638	-				+0.8
3,086,647	+				+0.0
3,086,706	+		SO2949	0.13	-0.8
3,086,709	-		SO2949	0.13	-1.2
3,086,715	-		SO2949	0.14	+0.1
3,086,720	-		SO2949	0.15	-0.5