Strain Fitness in Shewanella oneidensis MR-1 around SO2067

Experiment: A22 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.003 mg/ml
2,163,101	-	tyrP	SO2065	0.65	+0.3
2,163,101	-	tyrP	SO2065	0.65	-0.1
2,163,354	+	tyrP	SO2065	0.86	+1.0
2,163,359	+	tyrP	SO2065	0.87	-2.1
2,163,424	-				+0.0
2,163,424	-				-1.0
2,163,458	+				+0.6
2,163,630	+				-0.3
2,163,657	+				-0.0
2,163,703	-				-1.8
2,163,876	-				+0.2
2,164,152	+				-0.8
2,164,153	-				+0.7
2,164,207	+	hisI	SO2067	0.18	-0.9
2,164,318	+	hisI	SO2067	0.35	-1.2
2,164,511	+	hisI	SO2067	0.65	-0.4
2,164,600	+	hisI	SO2067	0.79	-0.2
2,164,800	+				+0.7
2,164,800	+				-0.5
2,164,851	+				-0.1
2,164,917	-	hisF	SO2068	0.13	-0.3
2,164,924	+	hisF	SO2068	0.14	-0.3
2,164,953	+	hisF	SO2068	0.18	+1.0
2,165,133	-	hisF	SO2068	0.41	+0.0
2,165,306	-	hisF	SO2068	0.64	-0.9
2,165,328	-	hisF	SO2068	0.67	-0.1
2,165,390	+	hisF	SO2068	0.75	+0.0
2,165,398	-	hisF	SO2068	0.76	-0.9
2,165,421	-	hisF	SO2068	0.79	+1.2
2,165,528	+				-0.2
2,165,529	-				-0.3
2,165,561	-				-2.0
2,165,583	+				-0.9
2,165,602	+				+0.1
2,165,660	+	hisA	SO2069	0.12	+0.6
2,165,695	-	hisA	SO2069	0.17	-0.1