Strain Fitness in Shewanella oneidensis MR-1 around SO1807

Experiment: A22 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.003 mg/ml
1,896,903	+	pspF	SO1806	0.32	+0.6
1,896,908	+	pspF	SO1806	0.32	+0.2
1,896,967	+	pspF	SO1806	0.37	+0.3
1,896,989	-	pspF	SO1806	0.39	-0.1
1,897,037	+	pspF	SO1806	0.44	+0.1
1,897,052	+	pspF	SO1806	0.45	+1.1
1,897,060	-	pspF	SO1806	0.46	+0.3
1,897,060	-	pspF	SO1806	0.46	-1.7
1,897,081	+	pspF	SO1806	0.48	-1.1
1,897,165	-	pspF	SO1806	0.55	-1.5
1,897,353	+	pspF	SO1806	0.73	-0.1
1,897,371	-	pspF	SO1806	0.74	+0.1
1,897,443	+	pspF	SO1806	0.81	-0.2
1,897,497	-	pspF	SO1806	0.86	-0.2
1,897,585	+				+0.2
1,897,592	+				-0.2
1,897,600	-				-1.9
1,897,857	+				-0.8
1,897,863	+				-0.5
1,897,891	+				-0.1
1,897,947	+	pspA	SO1807	0.17	-0.4
1,898,142	-	pspA	SO1807	0.46	-0.9
1,898,253	+	pspA	SO1807	0.62	-0.7
1,898,512	+				+1.3
1,898,707	-	pspB	SO1808	0.74	-0.7
1,898,830	+	pspC	SO1809	0.19	+0.2
1,898,830	+	pspC	SO1809	0.19	+0.3
1,898,838	-	pspC	SO1809	0.21	-0.2
1,898,941	-	pspC	SO1809	0.48	-0.9
1,898,961	-	pspC	SO1809	0.53	-0.5
1,898,999	-	pspC	SO1809	0.63	-0.3
1,899,059	-	pspC	SO1809	0.79	+0.3
1,899,481	-		SO1810	0.15	-0.5
1,899,497	-		SO1810	0.17	-0.3