Experiment: A22 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt panC and panB are separated by 76 nucleotides panB and folK-1 are separated by 56 nucleotides folK-1 and pcnB overlap by 1 nucleotides
SO0869: panC - pantoate--beta-alanine ligase (NCBI ptt file), at 899,247 to 900,092
panC
SO0870: panB - 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI ptt file), at 900,169 to 900,963
panB
SO0871: folK-1 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (NCBI ptt file), at 901,020 to 901,508
folK-1
SO0872: pcnB - polyA polymerase (NCBI ptt file), at 901,508 to 902,824
pcnB
Position (kb) 901
902 Strain fitness (log2 ratio) -1
0
1 at 900.166 kb on - strand at 900.357 kb on - strand, within panB at 900.551 kb on - strand, within panB at 900.740 kb on - strand, within panB at 900.800 kb on - strand, within panB at 900.947 kb on - strand at 900.962 kb on - strand at 901.040 kb on - strand at 901.074 kb on + strand, within folK-1 at 901.571 kb on - strand at 901.752 kb on - strand, within pcnB at 902.032 kb on - strand, within pcnB at 902.288 kb on - strand, within pcnB at 902.288 kb on - strand, within pcnB at 902.343 kb on - strand, within pcnB at 902.343 kb on - strand, within pcnB at 902.343 kb on - strand, within pcnB at 902.343 kb on - strand, within pcnB at 902.343 kb on - strand, within pcnB at 902.343 kb on - strand, within pcnB at 902.343 kb on - strand, within pcnB at 902.343 kb on - strand, within pcnB at 902.343 kb on - strand, within pcnB at 902.343 kb on - strand, within pcnB at 902.358 kb on - strand, within pcnB
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.003 mg/ml remove 900,166 - +0.1 900,357 - panB SO0870 0.24 -0.5 900,551 - panB SO0870 0.48 -0.4 900,740 - panB SO0870 0.72 -0.1 900,800 - panB SO0870 0.79 -0.4 900,947 - +1.3 900,962 - -1.0 901,040 - +0.4 901,074 + folK-1 SO0871 0.11 -0.5 901,571 - +0.3 901,752 - pcnB SO0872 0.19 -0.2 902,032 - pcnB SO0872 0.40 -0.3 902,288 - pcnB SO0872 0.59 +1.6 902,288 - pcnB SO0872 0.59 +0.7 902,343 - pcnB SO0872 0.63 +0.0 902,343 - pcnB SO0872 0.63 +0.8 902,343 - pcnB SO0872 0.63 -1.0 902,343 - pcnB SO0872 0.63 +1.3 902,343 - pcnB SO0872 0.63 +0.6 902,343 - pcnB SO0872 0.63 +0.6 902,343 - pcnB SO0872 0.63 -0.3 902,343 - pcnB SO0872 0.63 -1.1 902,343 - pcnB SO0872 0.63 +0.3 902,343 - pcnB SO0872 0.63 -0.0 902,358 - pcnB SO0872 0.65 -0.1
Or see this region's nucleotide sequence