Experiment: A22 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0378 and SO0379 are separated by 39 nucleotides SO0379 and hsdR-1 are separated by 2 nucleotides
SO0378: SO0378 - ISSod4, transposase (NCBI ptt file), at 389,568 to 390,770
SO0378
SO0379: SO0379 - conserved hypothetical protein (NCBI ptt file), at 390,810 to 391,523
SO0379
SO0380: hsdR-1 - type I restriction-modification system, R subunit (NCBI ptt file), at 391,526 to 394,627
hsdR-1
Position (kb) 390
391
392 Strain fitness (log2 ratio) -2
-1
0
1 at 390.869 kb on + strand at 390.876 kb on - strand at 390.876 kb on - strand at 390.925 kb on - strand, within SO0379 at 390.951 kb on - strand, within SO0379 at 391.084 kb on - strand, within SO0379 at 391.089 kb on - strand, within SO0379 at 391.095 kb on - strand, within SO0379 at 391.124 kb on + strand, within SO0379 at 391.124 kb on + strand, within SO0379 at 391.134 kb on + strand, within SO0379 at 391.142 kb on - strand, within SO0379 at 391.167 kb on + strand, within SO0379 at 391.175 kb on - strand, within SO0379 at 391.219 kb on - strand, within SO0379 at 391.228 kb on - strand, within SO0379 at 391.235 kb on + strand, within SO0379 at 391.265 kb on + strand, within SO0379 at 391.323 kb on + strand, within SO0379 at 391.409 kb on - strand, within SO0379 at 391.447 kb on + strand, within SO0379 at 391.447 kb on + strand, within SO0379 at 391.486 kb on + strand at 391.486 kb on + strand at 391.486 kb on + strand at 391.486 kb on + strand at 391.494 kb on - strand at 391.494 kb on - strand at 391.494 kb on - strand at 391.494 kb on - strand at 391.517 kb on + strand at 391.571 kb on - strand at 391.576 kb on + strand at 391.581 kb on + strand at 391.584 kb on - strand at 391.682 kb on + strand at 391.690 kb on - strand at 391.711 kb on + strand at 391.712 kb on + strand at 391.712 kb on + strand at 391.791 kb on - strand at 391.791 kb on - strand at 391.853 kb on - strand, within hsdR-1 at 391.883 kb on - strand, within hsdR-1 at 391.889 kb on - strand, within hsdR-1 at 391.907 kb on + strand, within hsdR-1 at 391.942 kb on + strand, within hsdR-1 at 391.942 kb on + strand at 391.942 kb on + strand, within hsdR-1 at 391.942 kb on + strand, within hsdR-1 at 391.942 kb on + strand, within hsdR-1 at 391.942 kb on + strand, within hsdR-1 at 391.942 kb on + strand, within hsdR-1 at 391.942 kb on + strand, within hsdR-1 at 391.942 kb on + strand, within hsdR-1 at 391.942 kb on + strand, within hsdR-1 at 391.942 kb on + strand, within hsdR-1 at 391.942 kb on + strand, within hsdR-1 at 391.942 kb on + strand, within hsdR-1 at 391.942 kb on + strand, within hsdR-1 at 391.942 kb on + strand, within hsdR-1 at 391.942 kb on + strand, within hsdR-1 at 391.944 kb on - strand, within hsdR-1 at 391.950 kb on - strand, within hsdR-1 at 391.950 kb on - strand, within hsdR-1 at 391.950 kb on - strand, within hsdR-1 at 391.950 kb on - strand, within hsdR-1 at 391.950 kb on - strand, within hsdR-1 at 391.950 kb on - strand, within hsdR-1 at 391.950 kb on - strand, within hsdR-1 at 391.950 kb on - strand, within hsdR-1 at 391.950 kb on - strand, within hsdR-1 at 391.950 kb on - strand, within hsdR-1 at 391.975 kb on - strand, within hsdR-1 at 392.000 kb on - strand, within hsdR-1 at 392.010 kb on - strand, within hsdR-1 at 392.028 kb on + strand, within hsdR-1 at 392.121 kb on - strand, within hsdR-1 at 392.152 kb on + strand, within hsdR-1 at 392.160 kb on - strand, within hsdR-1 at 392.160 kb on - strand, within hsdR-1 at 392.174 kb on + strand, within hsdR-1 at 392.174 kb on + strand, within hsdR-1 at 392.181 kb on - strand, within hsdR-1 at 392.208 kb on + strand, within hsdR-1 at 392.210 kb on + strand, within hsdR-1 at 392.216 kb on - strand, within hsdR-1 at 392.218 kb on - strand, within hsdR-1 at 392.248 kb on - strand, within hsdR-1 at 392.267 kb on + strand, within hsdR-1 at 392.320 kb on + strand, within hsdR-1 at 392.320 kb on + strand, within hsdR-1 at 392.358 kb on - strand, within hsdR-1 at 392.367 kb on + strand, within hsdR-1 at 392.437 kb on + strand, within hsdR-1 at 392.520 kb on - strand, within hsdR-1 at 392.520 kb on - strand, within hsdR-1
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.003 mg/ml remove 390,869 + -0.3 390,876 - -0.7 390,876 - -0.7 390,925 - SO0379 0.16 -1.4 390,951 - SO0379 0.20 -1.0 391,084 - SO0379 0.38 -0.2 391,089 - SO0379 0.39 -0.5 391,095 - SO0379 0.40 -1.3 391,124 + SO0379 0.44 +0.3 391,124 + SO0379 0.44 -1.0 391,134 + SO0379 0.45 -0.8 391,142 - SO0379 0.46 +0.1 391,167 + SO0379 0.50 +0.4 391,175 - SO0379 0.51 -1.0 391,219 - SO0379 0.57 +1.0 391,228 - SO0379 0.59 +0.3 391,235 + SO0379 0.60 -1.1 391,265 + SO0379 0.64 +0.8 391,323 + SO0379 0.72 -0.9 391,409 - SO0379 0.84 -0.5 391,447 + SO0379 0.89 -1.7 391,447 + SO0379 0.89 -0.3 391,486 + +0.2 391,486 + +0.5 391,486 + +0.1 391,486 + -0.7 391,494 - -0.6 391,494 - -0.1 391,494 - +1.1 391,494 - -0.4 391,517 + -0.6 391,571 - -1.6 391,576 + -0.2 391,581 + -0.4 391,584 - -0.0 391,682 + -0.3 391,690 - +0.4 391,711 + -0.8 391,712 + -0.0 391,712 + -0.6 391,791 - -0.7 391,791 - -0.0 391,853 - hsdR-1 SO0380 0.11 +1.0 391,883 - hsdR-1 SO0380 0.12 +1.0 391,889 - hsdR-1 SO0380 0.12 +0.6 391,907 + hsdR-1 SO0380 0.12 +0.1 391,942 + hsdR-1 SO0380 0.13 +0.2 391,942 + +0.0 391,942 + hsdR-1 SO0380 0.13 -1.2 391,942 + hsdR-1 SO0380 0.13 +0.1 391,942 + hsdR-1 SO0380 0.13 -1.0 391,942 + hsdR-1 SO0380 0.13 -0.0 391,942 + hsdR-1 SO0380 0.13 -0.4 391,942 + hsdR-1 SO0380 0.13 -0.1 391,942 + hsdR-1 SO0380 0.13 -0.1 391,942 + hsdR-1 SO0380 0.13 -0.5 391,942 + hsdR-1 SO0380 0.13 -1.2 391,942 + hsdR-1 SO0380 0.13 +1.0 391,942 + hsdR-1 SO0380 0.13 -0.1 391,942 + hsdR-1 SO0380 0.13 +0.5 391,942 + hsdR-1 SO0380 0.13 +0.4 391,942 + hsdR-1 SO0380 0.13 +0.7 391,944 - hsdR-1 SO0380 0.13 -0.0 391,950 - hsdR-1 SO0380 0.14 -0.3 391,950 - hsdR-1 SO0380 0.14 -0.1 391,950 - hsdR-1 SO0380 0.14 -0.4 391,950 - hsdR-1 SO0380 0.14 +0.1 391,950 - hsdR-1 SO0380 0.14 -0.1 391,950 - hsdR-1 SO0380 0.14 -0.2 391,950 - hsdR-1 SO0380 0.14 +0.6 391,950 - hsdR-1 SO0380 0.14 -1.1 391,950 - hsdR-1 SO0380 0.14 -0.0 391,950 - hsdR-1 SO0380 0.14 -1.0 391,975 - hsdR-1 SO0380 0.14 +0.7 392,000 - hsdR-1 SO0380 0.15 -0.4 392,010 - hsdR-1 SO0380 0.16 +0.0 392,028 + hsdR-1 SO0380 0.16 +1.0 392,121 - hsdR-1 SO0380 0.19 -1.2 392,152 + hsdR-1 SO0380 0.20 +0.1 392,160 - hsdR-1 SO0380 0.20 +0.9 392,160 - hsdR-1 SO0380 0.20 -0.6 392,174 + hsdR-1 SO0380 0.21 +0.3 392,174 + hsdR-1 SO0380 0.21 +0.1 392,181 - hsdR-1 SO0380 0.21 -0.2 392,208 + hsdR-1 SO0380 0.22 +0.7 392,210 + hsdR-1 SO0380 0.22 +0.1 392,216 - hsdR-1 SO0380 0.22 +0.2 392,218 - hsdR-1 SO0380 0.22 +0.0 392,248 - hsdR-1 SO0380 0.23 +0.2 392,267 + hsdR-1 SO0380 0.24 -0.8 392,320 + hsdR-1 SO0380 0.26 +0.4 392,320 + hsdR-1 SO0380 0.26 -1.2 392,358 - hsdR-1 SO0380 0.27 +0.3 392,367 + hsdR-1 SO0380 0.27 +0.3 392,437 + hsdR-1 SO0380 0.29 +0.2 392,520 - hsdR-1 SO0380 0.32 +0.6 392,520 - hsdR-1 SO0380 0.32 -2.4
Or see this region's nucleotide sequence