Experiment: A22 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gspC and gspD are separated by 24 nucleotides gspD and gspE overlap by 4 nucleotides
SO0165: gspC - general secretion pathway protein C (NCBI ptt file), at 171,350 to 172,276
gspC
SO0166: gspD - general secretion pathway protein D (NCBI ptt file), at 172,301 to 174,415
gspD
SO0167: gspE - general secretion pathway protein E (NCBI ptt file), at 174,412 to 175,977
gspE
Position (kb) 172
173
174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 171.305 kb on - strand at 171.329 kb on + strand at 171.361 kb on + strand at 171.387 kb on - strand at 171.453 kb on - strand, within gspC at 171.513 kb on - strand, within gspC at 171.518 kb on - strand, within gspC at 171.520 kb on + strand, within gspC at 171.528 kb on - strand, within gspC at 171.537 kb on - strand, within gspC at 171.538 kb on - strand, within gspC at 171.626 kb on + strand, within gspC at 171.634 kb on - strand, within gspC at 171.655 kb on - strand, within gspC at 171.663 kb on - strand, within gspC at 171.812 kb on + strand, within gspC at 171.834 kb on + strand, within gspC at 171.867 kb on - strand, within gspC at 171.931 kb on - strand, within gspC at 171.963 kb on + strand, within gspC at 172.073 kb on - strand, within gspC at 172.096 kb on - strand, within gspC at 172.096 kb on - strand, within gspC at 172.130 kb on - strand, within gspC at 172.315 kb on + strand at 172.401 kb on + strand at 172.509 kb on + strand at 172.514 kb on - strand, within gspD at 172.516 kb on + strand, within gspD at 172.562 kb on + strand, within gspD at 172.575 kb on - strand, within gspD at 172.667 kb on + strand, within gspD at 172.667 kb on + strand, within gspD at 172.667 kb on + strand, within gspD at 172.675 kb on - strand, within gspD at 172.700 kb on + strand, within gspD at 172.705 kb on + strand, within gspD at 172.705 kb on + strand, within gspD at 172.705 kb on + strand, within gspD at 172.705 kb on + strand, within gspD at 172.705 kb on + strand, within gspD at 172.705 kb on + strand, within gspD at 172.705 kb on + strand, within gspD at 172.713 kb on - strand, within gspD at 172.713 kb on - strand, within gspD at 172.713 kb on - strand, within gspD at 172.713 kb on - strand, within gspD at 172.713 kb on - strand, within gspD at 172.713 kb on - strand, within gspD at 172.713 kb on - strand, within gspD at 172.718 kb on - strand, within gspD at 172.741 kb on - strand, within gspD at 172.775 kb on - strand, within gspD at 172.791 kb on + strand, within gspD at 172.799 kb on - strand, within gspD at 172.812 kb on - strand, within gspD at 172.940 kb on + strand, within gspD at 172.948 kb on - strand, within gspD at 172.948 kb on - strand, within gspD at 172.948 kb on - strand, within gspD at 173.011 kb on + strand, within gspD at 173.011 kb on + strand, within gspD at 173.011 kb on + strand, within gspD at 173.011 kb on + strand, within gspD at 173.019 kb on - strand, within gspD at 173.019 kb on - strand, within gspD at 173.019 kb on - strand, within gspD at 173.055 kb on + strand, within gspD at 173.087 kb on + strand, within gspD at 173.087 kb on + strand, within gspD at 173.092 kb on + strand, within gspD at 173.101 kb on + strand, within gspD at 173.107 kb on + strand, within gspD at 173.129 kb on - strand, within gspD at 173.146 kb on - strand, within gspD at 173.146 kb on - strand, within gspD at 173.156 kb on + strand, within gspD at 173.156 kb on - strand, within gspD at 173.174 kb on - strand, within gspD at 173.283 kb on + strand, within gspD at 173.283 kb on + strand, within gspD at 173.283 kb on + strand, within gspD at 173.283 kb on + strand, within gspD at 173.286 kb on - strand, within gspD at 173.291 kb on - strand, within gspD at 173.291 kb on - strand, within gspD at 173.291 kb on - strand, within gspD at 173.307 kb on + strand, within gspD at 173.317 kb on - strand, within gspD at 173.364 kb on - strand, within gspD at 173.398 kb on + strand, within gspD at 173.416 kb on - strand, within gspD at 173.434 kb on - strand, within gspD at 173.500 kb on + strand, within gspD at 173.500 kb on + strand, within gspD at 173.588 kb on + strand, within gspD at 173.606 kb on + strand, within gspD at 173.679 kb on + strand, within gspD at 173.705 kb on - strand, within gspD at 173.781 kb on + strand, within gspD at 173.808 kb on + strand, within gspD at 173.836 kb on + strand, within gspD at 173.871 kb on + strand, within gspD at 174.092 kb on + strand, within gspD at 174.220 kb on + strand at 174.271 kb on + strand at 174.271 kb on + strand at 174.275 kb on - strand at 174.335 kb on + strand at 174.335 kb on + strand at 174.335 kb on + strand at 174.335 kb on + strand at 174.352 kb on + strand at 174.360 kb on - strand at 174.588 kb on + strand, within gspE at 174.646 kb on - strand, within gspE at 174.654 kb on + strand, within gspE at 174.669 kb on - strand, within gspE at 174.702 kb on + strand, within gspE at 174.733 kb on - strand, within gspE at 174.797 kb on + strand, within gspE at 174.807 kb on + strand, within gspE at 174.815 kb on - strand, within gspE at 174.833 kb on + strand, within gspE at 174.843 kb on + strand, within gspE at 174.866 kb on - strand, within gspE at 174.953 kb on - strand, within gspE at 174.976 kb on + strand, within gspE at 174.999 kb on + strand, within gspE at 174.999 kb on + strand, within gspE at 174.999 kb on + strand, within gspE at 175.007 kb on - strand, within gspE at 175.013 kb on - strand, within gspE at 175.269 kb on + strand, within gspE at 175.285 kb on - strand, within gspE at 175.407 kb on - strand, within gspE
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.003 mg/ml remove 171,305 - -1.6 171,329 + -0.9 171,361 + +0.2 171,387 - -2.4 171,453 - gspC SO0165 0.11 -2.1 171,513 - gspC SO0165 0.18 -1.3 171,518 - gspC SO0165 0.18 -1.5 171,520 + gspC SO0165 0.18 -1.8 171,528 - gspC SO0165 0.19 -1.8 171,537 - gspC SO0165 0.20 -2.2 171,538 - gspC SO0165 0.20 -2.1 171,626 + gspC SO0165 0.30 -1.0 171,634 - gspC SO0165 0.31 -1.5 171,655 - gspC SO0165 0.33 -0.4 171,663 - gspC SO0165 0.34 -1.5 171,812 + gspC SO0165 0.50 -0.6 171,834 + gspC SO0165 0.52 -1.2 171,867 - gspC SO0165 0.56 -2.6 171,931 - gspC SO0165 0.63 -2.5 171,963 + gspC SO0165 0.66 -0.0 172,073 - gspC SO0165 0.78 -0.2 172,096 - gspC SO0165 0.80 -3.1 172,096 - gspC SO0165 0.80 -0.4 172,130 - gspC SO0165 0.84 -1.3 172,315 + -2.4 172,401 + -0.3 172,509 + -3.1 172,514 - gspD SO0166 0.10 -1.3 172,516 + gspD SO0166 0.10 -0.1 172,562 + gspD SO0166 0.12 -0.4 172,575 - gspD SO0166 0.13 -1.1 172,667 + gspD SO0166 0.17 -1.4 172,667 + gspD SO0166 0.17 -1.0 172,667 + gspD SO0166 0.17 -2.0 172,675 - gspD SO0166 0.18 -1.7 172,700 + gspD SO0166 0.19 +0.4 172,705 + gspD SO0166 0.19 -2.1 172,705 + gspD SO0166 0.19 +0.5 172,705 + gspD SO0166 0.19 -0.5 172,705 + gspD SO0166 0.19 -0.4 172,705 + gspD SO0166 0.19 -1.9 172,705 + gspD SO0166 0.19 -0.7 172,705 + gspD SO0166 0.19 -0.2 172,713 - gspD SO0166 0.19 -2.4 172,713 - gspD SO0166 0.19 -1.4 172,713 - gspD SO0166 0.19 -0.0 172,713 - gspD SO0166 0.19 -0.2 172,713 - gspD SO0166 0.19 -0.6 172,713 - gspD SO0166 0.19 -2.0 172,713 - gspD SO0166 0.19 -1.7 172,718 - gspD SO0166 0.20 -1.2 172,741 - gspD SO0166 0.21 -0.8 172,775 - gspD SO0166 0.22 -2.2 172,791 + gspD SO0166 0.23 -0.2 172,799 - gspD SO0166 0.24 -1.5 172,812 - gspD SO0166 0.24 -0.2 172,940 + gspD SO0166 0.30 -0.8 172,948 - gspD SO0166 0.31 -1.0 172,948 - gspD SO0166 0.31 +0.0 172,948 - gspD SO0166 0.31 -2.9 173,011 + gspD SO0166 0.34 -0.9 173,011 + gspD SO0166 0.34 -1.5 173,011 + gspD SO0166 0.34 +0.6 173,011 + gspD SO0166 0.34 +0.6 173,019 - gspD SO0166 0.34 -0.2 173,019 - gspD SO0166 0.34 -0.1 173,019 - gspD SO0166 0.34 +0.5 173,055 + gspD SO0166 0.36 -1.5 173,087 + gspD SO0166 0.37 -3.3 173,087 + gspD SO0166 0.37 -1.4 173,092 + gspD SO0166 0.37 -1.2 173,101 + gspD SO0166 0.38 -2.0 173,107 + gspD SO0166 0.38 -1.9 173,129 - gspD SO0166 0.39 -1.7 173,146 - gspD SO0166 0.40 -0.6 173,146 - gspD SO0166 0.40 -0.9 173,156 + gspD SO0166 0.40 -1.5 173,156 - gspD SO0166 0.40 +0.1 173,174 - gspD SO0166 0.41 -1.0 173,283 + gspD SO0166 0.46 -0.7 173,283 + gspD SO0166 0.46 -1.0 173,283 + gspD SO0166 0.46 -0.5 173,283 + gspD SO0166 0.46 -0.4 173,286 - gspD SO0166 0.47 -0.1 173,291 - gspD SO0166 0.47 +0.2 173,291 - gspD SO0166 0.47 -1.4 173,291 - gspD SO0166 0.47 -2.6 173,307 + gspD SO0166 0.48 -0.8 173,317 - gspD SO0166 0.48 -0.8 173,364 - gspD SO0166 0.50 -1.8 173,398 + gspD SO0166 0.52 -2.3 173,416 - gspD SO0166 0.53 -1.2 173,434 - gspD SO0166 0.54 -2.0 173,500 + gspD SO0166 0.57 -0.4 173,500 + gspD SO0166 0.57 -1.6 173,588 + gspD SO0166 0.61 -0.0 173,606 + gspD SO0166 0.62 -1.7 173,679 + gspD SO0166 0.65 -1.4 173,705 - gspD SO0166 0.66 -1.0 173,781 + gspD SO0166 0.70 -1.5 173,808 + gspD SO0166 0.71 -0.3 173,836 + gspD SO0166 0.73 +1.0 173,871 + gspD SO0166 0.74 -0.8 174,092 + gspD SO0166 0.85 -3.1 174,220 + -0.5 174,271 + -0.0 174,271 + -0.1 174,275 - +0.4 174,335 + +0.2 174,335 + -0.1 174,335 + -0.4 174,335 + -0.0 174,352 + +0.3 174,360 - -1.7 174,588 + gspE SO0167 0.11 -0.4 174,646 - gspE SO0167 0.15 -0.9 174,654 + gspE SO0167 0.15 +0.4 174,669 - gspE SO0167 0.16 -1.6 174,702 + gspE SO0167 0.19 -1.7 174,733 - gspE SO0167 0.20 -2.0 174,797 + gspE SO0167 0.25 -0.5 174,807 + gspE SO0167 0.25 -0.3 174,815 - gspE SO0167 0.26 -1.4 174,833 + gspE SO0167 0.27 +0.5 174,843 + gspE SO0167 0.28 -0.3 174,866 - gspE SO0167 0.29 -1.6 174,953 - gspE SO0167 0.35 +1.1 174,976 + gspE SO0167 0.36 -1.9 174,999 + gspE SO0167 0.37 -2.6 174,999 + gspE SO0167 0.37 -0.7 174,999 + gspE SO0167 0.37 -0.0 175,007 - gspE SO0167 0.38 -1.7 175,013 - gspE SO0167 0.38 -1.3 175,269 + gspE SO0167 0.55 -1.1 175,285 - gspE SO0167 0.56 -1.1 175,407 - gspE SO0167 0.64 +0.4
Or see this region's nucleotide sequence