Strain Fitness in Shewanella amazonensis SB2B around Sama_3218

Experiment: A22 0.021875 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.021875 mg/ml
3,810,200	+				+1.2
3,810,200	+				-0.2
3,810,201	-				+0.5
3,810,253	+				-0.4
3,810,394	-		Sama_3218	0.10	+0.2
3,810,398	+		Sama_3218	0.11	+0.4
3,810,398	+		Sama_3218	0.11	+0.3
3,810,399	-		Sama_3218	0.11	+1.4
3,810,454	+		Sama_3218	0.16	-0.4
3,810,454	+		Sama_3218	0.16	-0.3
3,810,455	-		Sama_3218	0.16	-0.6
3,810,455	-		Sama_3218	0.16	+0.4
3,810,455	-		Sama_3218	0.16	-1.2
3,810,455	-		Sama_3218	0.16	+0.1
3,810,474	-		Sama_3218	0.18	-0.5
3,810,474	-		Sama_3218	0.18	-1.3
3,810,478	+		Sama_3218	0.19	-0.4
3,810,478	+		Sama_3218	0.19	-0.4
3,810,479	-		Sama_3218	0.19	-0.0
3,810,479	-		Sama_3218	0.19	-0.3
3,810,479	-		Sama_3218	0.19	-1.4
3,810,479	-		Sama_3218	0.19	+0.8
3,810,542	+		Sama_3218	0.26	-0.4
3,810,542	+		Sama_3218	0.26	-1.9
3,810,542	+		Sama_3218	0.26	+1.0
3,810,542	+		Sama_3218	0.26	+0.6
3,810,542	+		Sama_3218	0.26	+1.1
3,810,542	+		Sama_3218	0.26	+0.8
3,810,542	+		Sama_3218	0.26	+1.0
3,810,542	+		Sama_3218	0.26	-0.2
3,810,542	+		Sama_3218	0.26	+0.5
3,810,543	-		Sama_3218	0.26	-0.4
3,810,543	-		Sama_3218	0.26	-1.7
3,810,543	-		Sama_3218	0.26	-2.1
3,810,543	-		Sama_3218	0.26	-0.2
3,810,543	-		Sama_3218	0.26	-0.4
3,810,543	-		Sama_3218	0.26	+0.2
3,810,543	-		Sama_3218	0.26	-0.4
3,810,543	-		Sama_3218	0.26	+0.5
3,810,544	+		Sama_3218	0.26	-0.5
3,810,544	+		Sama_3218	0.26	-0.8
3,810,544	+		Sama_3218	0.26	-0.5
3,810,544	+		Sama_3218	0.26	-0.2
3,810,545	-		Sama_3218	0.26	+0.0
3,810,545	-		Sama_3218	0.26	-0.0
3,810,545	-		Sama_3218	0.26	+0.6
3,810,582	+		Sama_3218	0.30	-1.3
3,810,583	-		Sama_3218	0.30	+0.4
3,810,621	+		Sama_3218	0.34	-0.4
3,810,621	+		Sama_3218	0.34	-0.4
3,810,621	+		Sama_3218	0.34	+0.1
3,810,622	-		Sama_3218	0.34	-0.3
3,810,622	-		Sama_3218	0.34	+0.3
3,810,622	-		Sama_3218	0.34	-2.7
3,810,622	-		Sama_3218	0.34	-0.5
3,810,622	-		Sama_3218	0.34	+0.5
3,810,622	-		Sama_3218	0.34	-1.5
3,810,671	+		Sama_3218	0.39	-0.2
3,810,672	-		Sama_3218	0.39	+0.5
3,810,685	+		Sama_3218	0.40	-0.0
3,810,685	+		Sama_3218	0.40	+0.3
3,810,686	-		Sama_3218	0.41	+0.5
3,810,686	-		Sama_3218	0.41	+1.3
3,810,686	-		Sama_3218	0.41	+0.9
3,810,686	-		Sama_3218	0.41	+1.3
3,810,686	-		Sama_3218	0.41	-0.5
3,810,686	-		Sama_3218	0.41	-0.4
3,810,688	-		Sama_3218	0.41	+0.1
3,810,708	+		Sama_3218	0.43	+0.2
3,810,748	+		Sama_3218	0.47	-0.4
3,810,749	-		Sama_3218	0.47	-0.0
3,810,749	-		Sama_3218	0.47	-0.4
3,810,749	-		Sama_3218	0.47	-0.5
3,810,821	+		Sama_3218	0.55	+1.4
3,810,822	-		Sama_3218	0.55	+1.0
3,810,837	+		Sama_3218	0.56	-0.4
3,810,837	+		Sama_3218	0.56	+0.5
3,810,837	+		Sama_3218	0.56	+0.4
3,810,838	-		Sama_3218	0.56	+0.6
3,810,838	-		Sama_3218	0.56	-0.4
3,810,838	-		Sama_3218	0.56	+0.5
3,810,944	+		Sama_3218	0.67	-0.7
3,810,944	+		Sama_3218	0.67	-0.0
3,810,944	+		Sama_3218	0.67	+0.8
3,810,947	+		Sama_3218	0.68	+0.1
3,810,947	+		Sama_3218	0.68	-1.2
3,810,947	+		Sama_3218	0.68	-0.2
3,810,947	+		Sama_3218	0.68	+1.5
3,810,947	+		Sama_3218	0.68	-0.6
3,810,947	+		Sama_3218	0.68	-1.6
3,811,067	-		Sama_3218	0.80	-0.7
3,811,205	+				-0.6
3,811,206	-				-0.8
3,811,240	-				+0.2
3,811,240	-				-0.2
3,811,274	+				-0.4
3,811,275	-				-0.8
3,811,275	-				-0.1
3,811,278	+				+0.4
3,811,279	-				+0.1
3,811,285	+				+1.1
3,811,292	-				+0.4
3,811,308	+				-1.6
3,811,308	+				-0.8
3,811,308	+				-0.0
3,811,308	+				-0.8
3,811,308	+				-0.1
3,811,331	-				+0.8
3,811,345	-				-0.4
3,811,357	+				+0.5
3,811,358	-				-1.8
3,811,413	+				-3.0
3,811,413	+				+0.8
3,811,413	+				-0.4
3,811,414	-				-0.1
3,811,461	+	frdB	Sama_3219	0.13	-0.1
3,811,461	+	frdB	Sama_3219	0.13	-0.0
3,811,462	-	frdB	Sama_3219	0.14	+0.1
3,811,462	-	frdB	Sama_3219	0.14	-0.1
3,811,462	-	frdB	Sama_3219	0.14	-0.7
3,811,462	-	frdB	Sama_3219	0.14	+0.0
3,811,462	-	frdB	Sama_3219	0.14	+1.1
3,811,499	+	frdB	Sama_3219	0.19	-0.2
3,811,499	+	frdB	Sama_3219	0.19	-0.8
3,811,499	+	frdB	Sama_3219	0.19	-0.3
3,811,500	-	frdB	Sama_3219	0.19	-0.0
3,811,500	-	frdB	Sama_3219	0.19	-0.6
3,811,500	-	frdB	Sama_3219	0.19	+1.0
3,811,612	+	frdB	Sama_3219	0.34	-0.5
3,811,650	-	frdB	Sama_3219	0.39	+0.9
3,811,759	-	frdB	Sama_3219	0.54	+0.1
3,811,759	-	frdB	Sama_3219	0.54	-0.6
3,811,855	-	frdB	Sama_3219	0.67	-1.2
3,811,965	+	frdB	Sama_3219	0.83	-0.6
3,811,965	+	frdB	Sama_3219	0.83	+0.5
3,811,965	+	frdB	Sama_3219	0.83	-0.8
3,811,965	+	frdB	Sama_3219	0.83	+0.8
3,811,966	-	frdB	Sama_3219	0.83	-0.2
3,811,989	+	frdB	Sama_3219	0.86	+0.0
3,811,989	+	frdB	Sama_3219	0.86	-0.4
3,811,990	-	frdB	Sama_3219	0.86	-1.3
3,811,990	-	frdB	Sama_3219	0.86	-0.7
3,811,990	-	frdB	Sama_3219	0.86	-1.8
3,811,990	-	frdB	Sama_3219	0.86	-0.8
3,812,012	+	frdB	Sama_3219	0.89	+0.5
3,812,012	+	frdB	Sama_3219	0.89	+0.3
3,812,012	+	frdB	Sama_3219	0.89	-0.0
3,812,012	+	frdB	Sama_3219	0.89	+0.2
3,812,012	+	frdB	Sama_3219	0.89	+0.1
3,812,012	+	frdB	Sama_3219	0.89	+1.5
3,812,013	-	frdB	Sama_3219	0.89	+0.1
3,812,013	-	frdB	Sama_3219	0.89	+1.2
3,812,013	-	frdB	Sama_3219	0.89	-0.3
3,812,013	-	frdB	Sama_3219	0.89	-0.5
3,812,013	-	frdB	Sama_3219	0.89	-0.6
3,812,032	-				-0.1
3,812,064	+				+0.5
3,812,064	+				+0.2
3,812,096	+				-0.8
3,812,120	+				+0.6
3,812,120	+				+1.0
3,812,120	+				-0.5
3,812,120	+				+0.1
3,812,120	+				-0.8
3,812,206	-				+0.1