Strain Fitness in Shewanella amazonensis SB2B around Sama_1658

Experiment: A22 0.021875 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.021875 mg/ml
2,024,458	-		Sama_1657	0.63	+0.7
2,024,458	-		Sama_1657	0.63	-0.3
2,024,466	+		Sama_1657	0.63	+0.1
2,024,524	+		Sama_1657	0.67	+0.2
2,024,536	-		Sama_1657	0.68	+0.4
2,024,564	+		Sama_1657	0.70	-0.1
2,024,630	+		Sama_1657	0.74	-0.7
2,024,631	-		Sama_1657	0.74	+1.1
2,024,631	-		Sama_1657	0.74	-1.2
2,024,631	-		Sama_1657	0.74	-0.7
2,024,665	+		Sama_1657	0.76	-0.6
2,024,665	+		Sama_1657	0.76	-0.3
2,024,666	-		Sama_1657	0.76	-0.1
2,024,709	+		Sama_1657	0.79	-0.4
2,024,709	+		Sama_1657	0.79	+0.8
2,024,728	+		Sama_1657	0.80	+0.7
2,024,770	-		Sama_1657	0.83	+0.2
2,024,909	-				-2.6
2,025,005	-				-0.1
2,025,034	+				-0.9
2,025,034	+				+1.5
2,025,034	+				-0.2
2,025,034	+				-1.4
2,025,034	+				+0.5
2,025,035	-				+0.2
2,025,035	-				+2.1
2,025,035	-				-0.1
2,025,035	-				-0.7
2,025,035	-				+0.1
2,025,181	+				-0.6
2,025,238	+				-0.6
2,025,239	-				+0.1
2,025,257	-				+0.5
2,025,257	-				+0.8
2,025,265	+				+0.2
2,025,272	+				-0.1
2,025,272	+				+0.2
2,025,273	-				+0.1
2,025,283	+				+0.1
2,025,284	-				-0.5
2,025,284	-				+0.2
2,025,284	-				+0.0
2,025,287	+				-0.0
2,025,287	+				+1.1
2,025,287	+				+0.9
2,025,287	+				+0.1
2,025,288	-				-1.0
2,025,288	-				-0.5
2,025,288	-				-0.9
2,025,288	-				+0.5
2,025,288	-				+0.5
2,025,288	-				-0.5
2,025,288	-				-0.5
2,025,288	-				+0.1
2,025,288	-				-0.5
2,025,291	+				-0.1
2,025,291	+				-0.7
2,025,292	-				+0.6
2,025,292	-				-0.2
2,025,292	-				-0.7
2,025,292	-				+0.6
2,025,295	+				-0.9
2,025,295	+				-0.5
2,025,296	-				+0.0
2,025,296	-				+0.5
2,025,296	-				-0.1
2,025,449	+				-0.4
2,025,523	+		Sama_1658	0.12	-1.6
2,025,523	+		Sama_1658	0.12	-1.3
2,025,524	-		Sama_1658	0.12	+0.6
2,025,524	-		Sama_1658	0.12	-1.3
2,025,524	-		Sama_1658	0.12	-0.4
2,025,524	-		Sama_1658	0.12	+0.5
2,025,524	-		Sama_1658	0.12	+0.5
2,025,592	+		Sama_1658	0.22	+0.2
2,025,677	+		Sama_1658	0.35	-0.4
2,025,677	+		Sama_1658	0.35	-0.5
2,025,678	-		Sama_1658	0.35	-0.9
2,025,678	-		Sama_1658	0.35	-1.7
2,025,678	-		Sama_1658	0.35	-0.5
2,025,678	-		Sama_1658	0.35	+0.5
2,025,678	-		Sama_1658	0.35	-1.2
2,025,681	+		Sama_1658	0.36	+1.0
2,025,681	+		Sama_1658	0.36	-0.0
2,025,681	+		Sama_1658	0.36	-0.5
2,025,681	+		Sama_1658	0.36	+1.2
2,025,681	+		Sama_1658	0.36	+0.7
2,025,681	+		Sama_1658	0.36	-0.1
2,025,681	+		Sama_1658	0.36	-0.5
2,025,681	+		Sama_1658	0.36	-0.9
2,025,681	+		Sama_1658	0.36	+0.1
2,025,681	+		Sama_1658	0.36	+0.1
2,025,681	+		Sama_1658	0.36	+0.0
2,025,681	+		Sama_1658	0.36	+0.5
2,025,682	-		Sama_1658	0.36	-1.3
2,025,682	-		Sama_1658	0.36	+0.4
2,025,682	-		Sama_1658	0.36	-1.2
2,025,682	-		Sama_1658	0.36	-1.3
2,025,682	-		Sama_1658	0.36	-1.7
2,025,696	-		Sama_1658	0.38	+0.1
2,025,696	-		Sama_1658	0.38	-0.2
2,025,746	+		Sama_1658	0.45	-0.4
2,025,746	+		Sama_1658	0.45	-0.5
2,025,746	+		Sama_1658	0.45	-0.7
2,025,747	-		Sama_1658	0.46	-0.6
2,025,757	+		Sama_1658	0.47	-1.1
2,025,869	+		Sama_1658	0.64	+0.3
2,025,869	+		Sama_1658	0.64	-0.9
2,025,870	-		Sama_1658	0.64	+0.1
2,025,895	-		Sama_1658	0.68	-0.3
2,026,104	-				+0.7
2,026,186	+				-0.2
2,026,208	-				-2.2
2,026,240	+				+0.1
2,026,241	-				-0.1
2,026,242	+				+0.5
2,026,243	-				+0.1
2,026,243	-				-1.1
2,026,243	-				-1.2
2,026,243	-				+0.2
2,026,254	+				-2.6
2,026,347	-				+0.3
2,026,398	+				+1.5
2,026,399	-				-0.4
2,026,401	-				-0.3
2,026,525	+		Sama_1659	0.13	+1.5
2,026,525	+		Sama_1659	0.13	-0.9
2,026,526	-		Sama_1659	0.13	-0.2
2,026,526	-		Sama_1659	0.13	+0.7
2,026,526	-		Sama_1659	0.13	+0.1
2,026,674	+		Sama_1659	0.21	-0.4
2,026,675	-		Sama_1659	0.21	-1.1
2,026,675	-		Sama_1659	0.21	-1.9
2,026,675	-		Sama_1659	0.21	+0.8
2,026,745	-		Sama_1659	0.25	-0.0
2,026,771	+		Sama_1659	0.26	-0.2
2,026,772	-		Sama_1659	0.26	-0.5
2,026,836	-		Sama_1659	0.29	+1.6
2,026,871	+		Sama_1659	0.31	-0.8
2,026,871	+		Sama_1659	0.31	-1.1
2,026,872	-		Sama_1659	0.31	-0.4
2,026,872	-		Sama_1659	0.31	+0.1
2,026,872	-		Sama_1659	0.31	-0.1
2,026,944	+		Sama_1659	0.35	+0.4
2,026,945	-		Sama_1659	0.35	+1.1
2,026,978	+		Sama_1659	0.37	-2.0
2,027,050	+		Sama_1659	0.41	-0.9
2,027,051	-		Sama_1659	0.41	+0.6