Strain Fitness in Shewanella amazonensis SB2B around Sama_1554

Experiment: A22 0.021875 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.021875 mg/ml
1,890,393	-		Sama_1553	0.39	-0.8
1,890,393	-		Sama_1553	0.39	+0.0
1,890,393	-		Sama_1553	0.39	+0.3
1,890,395	-		Sama_1553	0.39	-0.8
1,890,461	-		Sama_1553	0.44	-0.1
1,890,602	+		Sama_1553	0.53	-0.1
1,890,618	-		Sama_1553	0.54	+0.7
1,890,618	-		Sama_1553	0.54	+2.2
1,890,726	+		Sama_1553	0.62	-0.7
1,890,727	-		Sama_1553	0.62	-0.6
1,890,798	+		Sama_1553	0.66	-0.8
1,890,827	+		Sama_1553	0.68	-1.6
1,890,827	+		Sama_1553	0.68	+1.5
1,890,827	+		Sama_1553	0.68	+0.9
1,890,827	+		Sama_1553	0.68	+1.2
1,890,828	-		Sama_1553	0.68	+0.3
1,890,828	-		Sama_1553	0.68	-0.1
1,890,828	-		Sama_1553	0.68	-0.5
1,890,841	+		Sama_1553	0.69	-1.8
1,890,900	-		Sama_1553	0.73	+1.5
1,890,913	+		Sama_1553	0.74	-0.1
1,890,913	+		Sama_1553	0.74	-0.5
1,890,913	+		Sama_1553	0.74	-0.2
1,890,914	-		Sama_1553	0.74	+0.2
1,890,914	-		Sama_1553	0.74	-0.2
1,891,046	+		Sama_1553	0.83	-0.3
1,891,047	-		Sama_1553	0.83	+0.2
1,891,062	+		Sama_1553	0.84	-0.6
1,891,062	+		Sama_1553	0.84	+0.1
1,891,063	-		Sama_1553	0.84	+0.1
1,891,134	+		Sama_1553	0.89	+1.9
1,891,135	-		Sama_1553	0.89	+0.9
1,891,252	+				+0.2
1,891,278	+				+0.2
1,891,345	-				+0.0
1,891,378	+				-0.3
1,891,378	+				+1.5
1,891,382	+				-0.7
1,891,394	+				-0.9
1,891,394	+				+1.5
1,891,395	-				-0.0
1,891,395	-				+0.1
1,891,395	-				-1.1
1,891,401	+				-0.5
1,891,401	+				-1.6
1,891,401	+				+0.5
1,891,402	-				-0.6
1,891,402	-				+0.4
1,891,408	+				+1.4
1,891,437	+				-0.1
1,891,484	+				+0.3
1,891,484	+				+0.2
1,891,484	+				-0.6
1,891,485	-				+1.2
1,891,485	-				-0.5
1,891,743	+		Sama_1554	0.16	+0.8
1,891,757	-		Sama_1554	0.17	+0.2
1,891,798	-		Sama_1554	0.18	-1.1
1,891,812	+		Sama_1554	0.19	-0.4
1,891,876	+		Sama_1554	0.22	+2.5
1,891,876	+		Sama_1554	0.22	-0.3
1,891,877	-		Sama_1554	0.22	+0.2
1,891,899	+		Sama_1554	0.23	+2.1
1,891,900	-		Sama_1554	0.23	+1.1
1,891,912	-		Sama_1554	0.24	-1.3
1,891,913	+		Sama_1554	0.24	-1.8
1,891,914	-		Sama_1554	0.24	-0.1
1,891,914	-		Sama_1554	0.24	+0.0
1,891,914	-		Sama_1554	0.24	-1.5
1,891,914	-		Sama_1554	0.24	+0.3
1,891,914	-		Sama_1554	0.24	-0.5
1,891,915	+		Sama_1554	0.24	+1.4
1,892,058	-		Sama_1554	0.30	-0.1
1,892,068	+		Sama_1554	0.31	+0.5
1,892,068	+		Sama_1554	0.31	-2.4
1,892,119	-		Sama_1554	0.33	+0.1
1,892,167	+		Sama_1554	0.35	-0.8
1,892,183	+		Sama_1554	0.36	-0.1
1,892,183	+		Sama_1554	0.36	-0.2
1,892,215	+		Sama_1554	0.38	+0.2
1,892,215	+		Sama_1554	0.38	-0.5
1,892,215	+		Sama_1554	0.38	-1.0
1,892,216	-		Sama_1554	0.38	+0.0
1,892,216	-		Sama_1554	0.38	+0.5
1,892,217	+		Sama_1554	0.38	+0.2
1,892,217	+		Sama_1554	0.38	-0.8
1,892,217	+		Sama_1554	0.38	-1.4
1,892,217	+		Sama_1554	0.38	-1.8
1,892,217	+		Sama_1554	0.38	-1.1
1,892,218	-		Sama_1554	0.38	+0.8
1,892,218	-		Sama_1554	0.38	+1.5
1,892,218	-		Sama_1554	0.38	+1.2
1,892,315	+		Sama_1554	0.42	-0.1
1,892,315	+		Sama_1554	0.42	-0.5
1,892,315	+		Sama_1554	0.42	-0.5
1,892,315	+		Sama_1554	0.42	-0.6
1,892,315	+		Sama_1554	0.42	-1.3
1,892,315	+		Sama_1554	0.42	-0.1
1,892,315	+		Sama_1554	0.42	-0.5
1,892,315	+		Sama_1554	0.42	-0.4
1,892,315	+		Sama_1554	0.42	-0.8
1,892,315	+		Sama_1554	0.42	+0.5
1,892,316	-		Sama_1554	0.42	+0.5
1,892,316	-		Sama_1554	0.42	+0.2
1,892,316	-		Sama_1554	0.42	+0.1
1,892,316	-		Sama_1554	0.42	+0.2
1,892,316	-		Sama_1554	0.42	+0.9
1,892,316	-		Sama_1554	0.42	+0.5
1,892,316	-		Sama_1554	0.42	+0.5
1,892,319	+		Sama_1554	0.42	-0.8
1,892,319	+		Sama_1554	0.42	+1.1
1,892,319	+		Sama_1554	0.42	+0.3
1,892,319	+		Sama_1554	0.42	-0.8
1,892,319	+		Sama_1554	0.42	-1.0
1,892,319	+		Sama_1554	0.42	-0.9
1,892,319	+		Sama_1554	0.42	+0.0
1,892,319	+		Sama_1554	0.42	-0.1
1,892,319	+		Sama_1554	0.42	+0.6
1,892,320	-		Sama_1554	0.42	-0.5
1,892,320	-		Sama_1554	0.42	-0.4
1,892,320	-		Sama_1554	0.42	+0.6
1,892,320	-		Sama_1554	0.42	+0.7
1,892,321	+		Sama_1554	0.42	-0.4
1,892,321	+		Sama_1554	0.42	+1.0
1,892,321	+		Sama_1554	0.42	+0.4
1,892,321	+		Sama_1554	0.42	-0.7
1,892,321	+		Sama_1554	0.42	-1.1
1,892,322	-		Sama_1554	0.42	+0.5
1,892,322	-		Sama_1554	0.42	+0.4
1,892,341	+		Sama_1554	0.43	+1.0
1,892,342	-		Sama_1554	0.43	-2.4
1,892,425	-		Sama_1554	0.47	-1.1
1,892,445	-		Sama_1554	0.48	+0.2
1,892,480	+		Sama_1554	0.50	-1.3
1,892,480	+		Sama_1554	0.50	-0.5
1,892,481	-		Sama_1554	0.50	-1.5
1,892,481	-		Sama_1554	0.50	-0.2
1,892,481	-		Sama_1554	0.50	+1.0
1,892,585	+		Sama_1554	0.54	+0.8
1,892,585	+		Sama_1554	0.54	-1.8
1,892,586	-		Sama_1554	0.54	+1.9
1,892,586	-		Sama_1554	0.54	+0.3
1,892,587	-		Sama_1554	0.55	+0.9
1,892,587	+		Sama_1554	0.55	+1.2
1,892,587	+		Sama_1554	0.55	+1.5
1,892,587	+		Sama_1554	0.55	+0.4
1,892,587	+		Sama_1554	0.55	+0.3
1,892,588	-		Sama_1554	0.55	+0.6
1,892,608	+		Sama_1554	0.55	-1.0
1,892,637	+		Sama_1554	0.57	+0.2
1,892,638	-		Sama_1554	0.57	-0.5
1,892,667	+		Sama_1554	0.58	-0.4
1,892,687	+		Sama_1554	0.59	+0.2
1,892,687	+		Sama_1554	0.59	+0.6
1,892,687	+		Sama_1554	0.59	+0.5
1,892,708	+		Sama_1554	0.60	-1.2
1,892,708	+		Sama_1554	0.60	+0.8
1,892,824	+		Sama_1554	0.65	+0.8
1,892,824	+		Sama_1554	0.65	-0.5
1,892,825	-		Sama_1554	0.65	+0.3
1,893,052	-		Sama_1554	0.76	+1.5
1,893,059	+		Sama_1554	0.76	+0.5
1,893,064	+		Sama_1554	0.76	-0.7
1,893,162	-		Sama_1554	0.81	-0.4
1,893,211	+		Sama_1554	0.83	+0.5
1,893,212	-		Sama_1554	0.83	-0.3
1,893,212	-		Sama_1554	0.83	+1.1
1,893,303	+		Sama_1554	0.87	+0.9
1,893,304	-		Sama_1554	0.87	+0.6
1,893,358	+		Sama_1554	0.90	-0.4
1,893,358	+		Sama_1554	0.90	+0.6
1,893,358	+		Sama_1554	0.90	-0.3
1,893,358	+		Sama_1554	0.90	+0.7
1,893,358	+		Sama_1554	0.90	-0.8
1,893,358	+		Sama_1554	0.90	+0.5
1,893,358	+		Sama_1554	0.90	+0.3
1,893,358	+		Sama_1554	0.90	+1.2
1,893,358	+		Sama_1554	0.90	+1.2
1,893,358	+		Sama_1554	0.90	+0.5
1,893,358	+		Sama_1554	0.90	+0.2
1,893,359	-		Sama_1554	0.90	-0.1
1,893,359	-		Sama_1554	0.90	-0.2
1,893,359	-		Sama_1554	0.90	-0.6
1,893,359	-		Sama_1554	0.90	+0.5
1,893,359	-		Sama_1554	0.90	+0.2
1,893,359	-		Sama_1554	0.90	+0.3
1,893,359	-		Sama_1554	0.90	+0.3
1,893,359	-		Sama_1554	0.90	+0.6
1,893,359	-		Sama_1554	0.90	+0.3
1,893,366	+				+0.3
1,893,366	+				+0.9
1,893,366	+				-1.1
1,893,366	+				-1.5
1,893,366	+				+0.4
1,893,366	+				-0.8
1,893,366	+				-0.6
1,893,366	+				-0.1
1,893,367	-				+1.5
1,893,381	+				+0.0
1,893,382	-				+0.8
1,893,423	-				-2.1
1,893,423	-				-1.1
1,893,436	+				-1.7
1,893,437	-				+0.0
1,893,440	-				+0.9
1,893,456	-				-0.3
1,893,466	-				-0.2
1,893,481	+				+1.5
1,893,481	+				+0.4
1,893,482	-				+0.9
1,893,482	-				-0.1
1,893,482	-				+0.0
1,893,507	-				-0.8
1,893,508	+				+0.0
1,893,508	+				-1.2
1,893,508	+				-0.6
1,893,508	+				-1.7
1,893,508	+				-0.3
1,893,508	+				-0.5
1,893,508	+				+0.5
1,893,509	-				-1.4
1,893,509	-				+0.2
1,893,517	+				+0.4
1,893,518	-				-1.2
1,893,539	-				-1.1
1,893,539	-				+0.3
1,893,607	+				-0.3
1,893,608	-				+0.9
1,893,661	+				-0.5
1,893,661	+				+0.0
1,893,662	-				-0.7
1,893,682	-				-1.2
1,893,693	+				+1.0
1,893,693	+				+0.7
1,893,694	-				-0.8
1,893,694	-				-0.1
1,893,694	-				-0.5
1,893,694	-				-1.4
1,893,697	+				-0.0
1,893,697	+				-0.1
1,893,698	-				+0.5
1,893,710	-				-0.5
1,893,848	-				-1.5
1,894,127	+				-0.4
1,894,127	+				-0.1
1,894,267	+				+0.4