Strain Fitness in Shewanella amazonensis SB2B around Sama_1349

Experiment: A22 0.021875 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.021875 mg/ml
1,638,171	+		Sama_1347	0.58	-2.2
1,638,196	-		Sama_1347	0.63	+0.5
1,638,196	-		Sama_1347	0.63	+0.0
1,638,304	-		Sama_1347	0.87	+0.5
1,638,327	+				-0.1
1,638,355	-				+0.4
1,638,482	-				-0.2
1,638,576	-		Sama_1348	0.23	+1.6
1,638,787	+		Sama_1348	0.62	-1.3
1,638,788	-		Sama_1348	0.63	-0.4
1,638,834	+		Sama_1348	0.71	+2.2
1,638,923	+		Sama_1348	0.88	+0.0
1,638,924	-		Sama_1348	0.88	-1.0
1,638,943	-				+0.6
1,638,972	-				+0.9
1,638,991	-				+0.3
1,639,000	+				-0.9
1,639,001	-				-0.4
1,639,083	+				-0.1
1,639,115	+				-0.1
1,639,116	-				-0.7
1,639,123	+				-1.0
1,639,195	-		Sama_1349	0.14	-0.2
1,639,195	-		Sama_1349	0.14	-1.7
1,639,195	-		Sama_1349	0.14	-1.0
1,639,416	+		Sama_1349	0.43	+0.2
1,639,582	-		Sama_1349	0.65	-0.2
1,639,621	-		Sama_1349	0.70	-1.1
1,639,828	+				-1.4
1,639,829	-				+0.4
1,639,829	-				+1.1
1,639,829	-				+0.4
1,640,014	-		Sama_1350	0.43	-1.0
1,640,058	-		Sama_1350	0.56	+0.8
1,640,058	-		Sama_1350	0.56	+1.0
1,640,061	+		Sama_1350	0.57	+0.0
1,640,062	-		Sama_1350	0.57	-0.5
1,640,063	+		Sama_1350	0.58	+0.6
1,640,120	+		Sama_1350	0.75	-0.6
1,640,121	-		Sama_1350	0.75	-1.0
1,640,121	-		Sama_1350	0.75	-1.0
1,640,202	+				-1.2
1,640,204	+				-1.8
1,640,204	+				+0.7
1,640,205	-				-1.0
1,640,205	-				-0.6
1,640,222	-				-0.6
1,640,222	-				-0.6
1,640,269	+				-0.7
1,640,269	+				+0.6
1,640,270	-				+0.2
1,640,335	+				-0.3
1,640,335	+				-0.1
1,640,336	-				-1.9
1,640,336	-				-1.4
1,640,336	-				-0.4
1,640,336	-				-0.4
1,640,438	+		Sama_1351	0.18	-0.3
1,640,439	-		Sama_1351	0.18	+1.1
1,640,439	-		Sama_1351	0.18	-0.7
1,640,484	-		Sama_1351	0.22	+0.4
1,640,509	-		Sama_1351	0.24	+0.9
1,640,509	-		Sama_1351	0.24	+0.2
1,640,528	+		Sama_1351	0.26	-1.4
1,640,609	-		Sama_1351	0.33	-1.2
1,640,714	-		Sama_1351	0.42	-0.5