Strain Fitness in Shewanella amazonensis SB2B around Sama_1306

Experiment: A22 0.021875 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.021875 mg/ml
1,588,919	+		Sama_1304	0.86	+1.1
1,588,919	+		Sama_1304	0.86	-0.3
1,588,919	+		Sama_1304	0.86	-0.9
1,588,919	+		Sama_1304	0.86	+0.1
1,589,023	-				-0.8
1,589,052	+				-0.1
1,589,053	-				-1.8
1,589,170	+		Sama_1305	0.15	-0.8
1,589,170	+		Sama_1305	0.15	+1.0
1,589,171	-		Sama_1305	0.15	+0.8
1,589,175	-		Sama_1305	0.16	+1.4
1,589,272	+		Sama_1305	0.27	-0.7
1,589,284	+		Sama_1305	0.29	+0.2
1,589,285	-		Sama_1305	0.29	+0.3
1,589,310	-		Sama_1305	0.32	-2.6
1,589,311	-		Sama_1305	0.32	-0.6
1,589,311	-		Sama_1305	0.32	-0.7
1,589,316	+		Sama_1305	0.32	-0.6
1,589,316	+		Sama_1305	0.32	-0.6
1,589,316	+		Sama_1305	0.32	-1.0
1,589,317	-		Sama_1305	0.32	-0.4
1,589,317	-		Sama_1305	0.32	-0.7
1,589,317	-		Sama_1305	0.32	-0.4
1,589,318	+		Sama_1305	0.33	+0.2
1,589,318	+		Sama_1305	0.33	-0.7
1,589,319	-		Sama_1305	0.33	-0.8
1,589,319	-		Sama_1305	0.33	+0.2
1,589,336	+		Sama_1305	0.35	+1.3
1,589,336	+		Sama_1305	0.35	+0.2
1,589,337	-		Sama_1305	0.35	-2.1
1,589,337	-		Sama_1305	0.35	-1.1
1,589,367	+		Sama_1305	0.38	-0.4
1,589,404	+		Sama_1305	0.43	+0.3
1,589,547	+		Sama_1305	0.60	-0.3
1,589,547	+		Sama_1305	0.60	-0.1
1,589,547	+		Sama_1305	0.60	+0.8
1,589,547	+		Sama_1305	0.60	-0.8
1,589,548	-		Sama_1305	0.60	-0.3
1,589,548	-		Sama_1305	0.60	+0.8
1,589,570	+		Sama_1305	0.63	+0.8
1,589,570	+		Sama_1305	0.63	-0.5
1,589,570	+		Sama_1305	0.63	+0.8
1,589,570	+		Sama_1305	0.63	-1.0
1,589,571	-		Sama_1305	0.63	-1.7
1,589,571	-		Sama_1305	0.63	-0.7
1,589,594	+		Sama_1305	0.66	+0.6
1,589,594	+		Sama_1305	0.66	-1.0
1,589,594	+		Sama_1305	0.66	+1.6
1,589,594	+		Sama_1305	0.66	+0.7
1,589,594	+		Sama_1305	0.66	-1.0
1,589,609	+		Sama_1305	0.67	+0.0
1,589,609	+		Sama_1305	0.67	+0.3
1,589,609	+		Sama_1305	0.67	-0.9
1,589,610	-		Sama_1305	0.68	-0.4
1,589,635	+		Sama_1305	0.70	-0.3
1,589,637	+		Sama_1305	0.71	-0.5
1,589,637	+		Sama_1305	0.71	+0.4
1,589,637	+		Sama_1305	0.71	-0.7
1,589,637	+		Sama_1305	0.71	-0.3
1,589,638	-		Sama_1305	0.71	+0.1
1,589,638	-		Sama_1305	0.71	+0.6
1,589,638	-		Sama_1305	0.71	+0.2
1,589,638	-		Sama_1305	0.71	+0.6
1,589,642	+		Sama_1305	0.71	-0.2
1,589,643	-		Sama_1305	0.71	-1.1
1,589,663	+		Sama_1305	0.74	+0.4
1,589,686	-		Sama_1305	0.77	+0.0
1,589,688	+		Sama_1305	0.77	-0.7
1,589,688	+		Sama_1305	0.77	-0.1
1,589,688	+		Sama_1305	0.77	+1.4
1,589,688	+		Sama_1305	0.77	-0.1
1,589,688	+		Sama_1305	0.77	+0.6
1,589,688	+		Sama_1305	0.77	-1.5
1,589,688	+		Sama_1305	0.77	-1.2
1,589,688	+		Sama_1305	0.77	+2.2
1,589,688	+		Sama_1305	0.77	+0.4
1,589,688	+		Sama_1305	0.77	-1.8
1,589,688	+		Sama_1305	0.77	-0.7
1,589,688	+		Sama_1305	0.77	+0.6
1,589,688	+		Sama_1305	0.77	+0.9
1,589,688	+		Sama_1305	0.77	+0.4
1,589,688	+		Sama_1305	0.77	+0.0
1,589,688	+		Sama_1305	0.77	-0.2
1,589,689	-		Sama_1305	0.77	-0.2
1,589,689	-		Sama_1305	0.77	-1.3
1,589,689	-		Sama_1305	0.77	-0.7
1,589,689	-		Sama_1305	0.77	-1.2
1,589,689	-		Sama_1305	0.77	-0.4
1,589,692	+		Sama_1305	0.77	-0.4
1,589,709	+		Sama_1305	0.79	+1.6
1,589,709	+		Sama_1305	0.79	-0.1
1,589,709	+		Sama_1305	0.79	+0.5
1,589,709	+		Sama_1305	0.79	+0.2
1,589,710	-		Sama_1305	0.79	+0.8
1,589,710	-		Sama_1305	0.79	-0.1
1,589,710	-		Sama_1305	0.79	+0.7
1,589,745	-		Sama_1305	0.84	+0.9
1,589,745	-		Sama_1305	0.84	+0.6
1,589,763	+		Sama_1305	0.86	+1.2
1,589,763	+		Sama_1305	0.86	-0.3
1,589,763	+		Sama_1305	0.86	+0.3
1,589,764	-		Sama_1305	0.86	-0.3
1,589,767	+		Sama_1305	0.86	-1.2
1,589,767	+		Sama_1305	0.86	-0.9
1,589,767	+		Sama_1305	0.86	+0.0
1,589,768	-		Sama_1305	0.86	+0.4
1,589,768	-		Sama_1305	0.86	+0.4
1,589,768	-		Sama_1305	0.86	-0.6
1,589,768	-		Sama_1305	0.86	-0.3
1,589,768	-		Sama_1305	0.86	-0.3
1,589,768	-		Sama_1305	0.86	+1.8
1,589,840	+				-0.7
1,589,934	-				-0.2
1,589,934	-				+0.0
1,589,934	-				+1.6
1,590,044	-		Sama_1306	0.22	+0.3
1,590,071	+		Sama_1306	0.25	+0.1
1,590,115	-		Sama_1306	0.31	-1.0
1,590,115	-		Sama_1306	0.31	+0.1
1,590,146	+		Sama_1306	0.35	-1.2
1,590,219	-		Sama_1306	0.45	+0.9
1,590,289	+		Sama_1306	0.54	-1.0
1,590,289	+		Sama_1306	0.54	-0.2
1,590,290	-		Sama_1306	0.54	-0.5
1,590,290	-		Sama_1306	0.54	-1.0
1,590,338	-		Sama_1306	0.61	-0.3
1,590,415	+		Sama_1306	0.71	+1.6
1,590,453	+		Sama_1306	0.76	-0.8
1,590,496	-		Sama_1306	0.81	-1.2
1,590,508	+		Sama_1306	0.83	-0.6
1,590,508	+		Sama_1306	0.83	-0.7
1,590,509	-		Sama_1306	0.83	+0.6
1,590,509	-		Sama_1306	0.83	+1.0
1,590,509	-		Sama_1306	0.83	-1.6
1,590,518	+		Sama_1306	0.84	-0.2
1,590,518	+		Sama_1306	0.84	-0.7
1,590,614	+				+0.9
1,590,615	-				+1.6
1,590,617	+				+0.0
1,590,617	+				-0.1
1,590,617	+				-0.4
1,590,618	-				-0.7
1,590,646	+				-0.1
1,590,646	+				+0.0
1,590,646	+				+0.9
1,590,647	-				+0.9
1,590,647	-				-0.4
1,590,647	-				-0.0
1,590,647	-				-0.1
1,590,657	-				-1.7
1,590,777	+		Sama_1307	0.30	+0.5
1,590,778	-		Sama_1307	0.31	+0.0
1,590,853	+				-1.4
1,590,853	+				+0.6
1,590,858	+				-0.2
1,590,875	+				-1.0
1,590,875	+				-0.2
1,590,877	+				-0.3
1,590,877	+				+0.5
1,590,877	+				-0.4
1,590,877	+				-0.2
1,590,877	+				-0.3
1,590,877	+				-0.7
1,590,878	-				-0.6
1,590,955	-				+0.9
1,590,987	+				-0.5
1,590,987	+				+0.3
1,590,987	+				-0.1
1,591,005	+		Sama_1308	0.15	+0.5
1,591,005	+		Sama_1308	0.15	+0.8
1,591,006	-		Sama_1308	0.15	+0.4
1,591,020	+		Sama_1308	0.19	+0.4
1,591,135	+		Sama_1308	0.50	-1.9
1,591,135	+		Sama_1308	0.50	+1.0
1,591,135	+		Sama_1308	0.50	-0.4
1,591,263	+		Sama_1308	0.84	+1.8
1,591,313	-				-2.6
1,591,313	-				+0.2
1,591,313	-				-0.4
1,591,313	-				-1.4
1,591,392	+				+1.0
1,591,392	+				-1.3
1,591,399	+				-1.0
1,591,471	+				-0.9
1,591,471	+				-0.1
1,591,471	+				-1.6
1,591,485	+				-1.8
1,591,497	+				-0.6
1,591,497	+				-0.0
1,591,497	+				+1.0
1,591,509	+				-0.1
1,591,510	-				+0.3
1,591,524	+				-0.1
1,591,525	-				+0.7
1,591,525	-				-1.6
1,591,525	-				+0.3
1,591,557	+		Sama_1309	0.13	-1.3
1,591,557	+		Sama_1309	0.13	-0.4
1,591,557	+		Sama_1309	0.13	+0.8
1,591,557	+		Sama_1309	0.13	-0.6
1,591,557	+		Sama_1309	0.13	-0.7
1,591,558	-		Sama_1309	0.13	-0.7
1,591,558	-		Sama_1309	0.13	+0.4
1,591,558	-		Sama_1309	0.13	-1.8
1,591,558	-		Sama_1309	0.13	+1.2
1,591,558	-		Sama_1309	0.13	+0.1
1,591,601	-		Sama_1309	0.21	-0.9
1,591,611	+		Sama_1309	0.23	+0.4
1,591,612	-		Sama_1309	0.23	+0.0
1,591,612	-		Sama_1309	0.23	+0.4
1,591,634	-		Sama_1309	0.27	+0.5