Strain Fitness in Shewanella amazonensis SB2B around Sama_0927

Experiment: A22 0.021875 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.021875 mg/ml
1,119,697	+	lspA	Sama_0925	0.89	-2.2
1,119,697	+	lspA	Sama_0925	0.89	-1.1
1,119,697	+	lspA	Sama_0925	0.89	-0.5
1,119,700	+	lspA	Sama_0925	0.90	+0.0
1,119,712	+				-0.9
1,119,712	+				-1.7
1,119,749	+				-2.6
1,121,147	+				-0.1
1,121,177	+				-0.2
1,121,181	+				-0.1
1,121,181	+				+0.5
1,121,182	-				-0.1
1,121,183	+				+0.2
1,121,184	-				-0.6
1,121,184	-				+1.8
1,121,199	+				+0.1
1,121,207	-				-0.2
1,121,207	-				+1.4
1,121,207	-				-0.2
1,121,239	-				-2.2
1,121,239	-				-1.2
1,121,291	+				-0.9
1,121,399	+		Sama_0928	0.11	-0.2
1,121,399	+		Sama_0928	0.11	-0.2
1,121,399	+		Sama_0928	0.11	-0.2
1,121,400	-		Sama_0928	0.11	-1.1
1,121,400	-		Sama_0928	0.11	-0.2
1,121,415	+		Sama_0928	0.14	-1.1
1,121,416	-		Sama_0928	0.14	+0.1
1,121,416	-		Sama_0928	0.14	-0.4
1,121,489	-		Sama_0928	0.28	+0.9
1,121,489	-		Sama_0928	0.28	-1.6
1,121,489	-		Sama_0928	0.28	+0.3
1,121,491	+		Sama_0928	0.28	-0.5
1,121,491	+		Sama_0928	0.28	-0.7
1,121,492	-		Sama_0928	0.29	+0.4
1,121,492	-		Sama_0928	0.29	+0.5
1,121,537	+		Sama_0928	0.37	+0.2
1,121,538	-		Sama_0928	0.37	+1.2
1,121,541	+		Sama_0928	0.38	+2.3
1,121,541	+		Sama_0928	0.38	-0.8
1,121,541	+		Sama_0928	0.38	-1.9
1,121,541	+		Sama_0928	0.38	+0.9
1,121,541	+		Sama_0928	0.38	+0.8
1,121,541	+		Sama_0928	0.38	+1.0
1,121,541	+		Sama_0928	0.38	-1.2
1,121,541	+		Sama_0928	0.38	-1.2
1,121,541	+		Sama_0928	0.38	-0.3
1,121,542	-		Sama_0928	0.38	-0.5
1,121,542	-		Sama_0928	0.38	-0.5
1,121,542	-		Sama_0928	0.38	+0.1
1,121,542	-		Sama_0928	0.38	+0.4
1,121,542	-		Sama_0928	0.38	+0.4
1,121,542	-		Sama_0928	0.38	+0.9
1,121,542	-		Sama_0928	0.38	+0.1
1,121,545	+		Sama_0928	0.39	-0.1
1,121,545	+		Sama_0928	0.39	+0.5
1,121,545	+		Sama_0928	0.39	+1.4
1,121,545	+		Sama_0928	0.39	+0.4
1,121,546	-		Sama_0928	0.39	-0.5
1,121,546	-		Sama_0928	0.39	-0.6
1,121,546	-		Sama_0928	0.39	-2.6
1,121,546	-		Sama_0928	0.39	+0.8
1,121,546	-		Sama_0928	0.39	+0.3
1,121,557	+		Sama_0928	0.41	-1.2
1,121,557	+		Sama_0928	0.41	-0.4
1,121,557	+		Sama_0928	0.41	-0.6
1,121,557	+		Sama_0928	0.41	-0.5
1,121,557	+		Sama_0928	0.41	-1.2
1,121,557	+		Sama_0928	0.41	+0.2
1,121,557	+		Sama_0928	0.41	+0.1
1,121,557	+		Sama_0928	0.41	-1.2
1,121,557	+		Sama_0928	0.41	+0.9
1,121,557	+		Sama_0928	0.41	+0.4
1,121,558	-		Sama_0928	0.41	+0.9
1,121,583	+		Sama_0928	0.46	-1.5
1,121,583	+		Sama_0928	0.46	-0.1
1,121,583	+		Sama_0928	0.46	-0.8
1,121,641	+		Sama_0928	0.57	-1.0
1,121,641	+		Sama_0928	0.57	-2.2
1,121,641	+		Sama_0928	0.57	+1.2
1,121,642	-		Sama_0928	0.57	+1.0
1,121,642	-		Sama_0928	0.57	+2.1
1,121,642	-		Sama_0928	0.57	-1.4
1,121,642	-		Sama_0928	0.57	-0.7
1,121,679	-		Sama_0928	0.65	+0.4
1,121,724	+		Sama_0928	0.73	-0.6
1,121,758	-		Sama_0928	0.80	-0.5
1,121,878	+				-1.3
1,121,879	-				+1.5
1,121,883	-				+0.3
1,121,883	-				-0.1
1,121,883	-				-0.2
1,121,923	+				+0.8
1,121,936	+				-0.6
1,121,936	+				-1.2
1,121,936	+				-0.5
1,121,936	+				-0.3
1,121,937	-				+0.5
1,121,937	-				+0.5
1,121,966	+		Sama_0929	0.10	+0.4
1,121,966	+		Sama_0929	0.10	-0.1
1,121,966	+		Sama_0929	0.10	-0.2
1,121,967	-		Sama_0929	0.10	+0.8
1,122,065	+		Sama_0929	0.20	+0.4
1,122,089	+		Sama_0929	0.23	+0.0
1,122,090	-		Sama_0929	0.23	-1.3
1,122,107	+		Sama_0929	0.25	+0.7
1,122,107	+		Sama_0929	0.25	+0.4
1,122,112	+		Sama_0929	0.25	+0.7
1,122,112	+		Sama_0929	0.25	-0.5
1,122,113	-		Sama_0929	0.25	-0.3