Strain Fitness in Shewanella oneidensis MR-1 around SO4374

Experiment: Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vancomycin 0.06 mg/ml
4,567,097	+		SO4373	0.53	-1.8
4,567,317	+		SO4373	0.65	-1.7
4,567,325	-		SO4373	0.66	-1.9
4,567,345	-		SO4373	0.67	-1.7
4,567,359	-		SO4373	0.68	-2.8
4,567,376	+		SO4373	0.69	-1.7
4,567,434	-		SO4373	0.72	+1.1
4,567,512	+		SO4373	0.76	-1.3
4,567,531	+		SO4373	0.77	-2.2
4,567,531	+		SO4373	0.77	-0.9
4,567,531	+		SO4373	0.77	-1.3
4,567,531	+		SO4373	0.77	-1.1
4,567,531	+		SO4373	0.77	-0.6
4,567,538	+		SO4373	0.78	-0.7
4,567,539	-		SO4373	0.78	-1.7
4,567,539	-		SO4373	0.78	-1.4
4,567,556	+		SO4373	0.79	-1.7
4,567,628	+		SO4373	0.83	-1.8
4,567,636	-		SO4373	0.83	-2.1
4,567,720	-		SO4373	0.88	-0.2
4,567,742	-		SO4373	0.89	-2.2
4,567,997	+				-2.3
4,567,997	+				-1.8
4,567,997	+				-1.5
4,567,997	+				-1.3
4,567,997	+				+0.9
4,567,997	+				-1.7
4,567,997	+				-1.2
4,567,997	+				-1.2
4,567,997	+				-0.6
4,567,997	+				-1.1
4,567,997	+				-1.7
4,568,005	-				-2.1
4,568,005	-				-0.8
4,568,005	-				-2.1
4,568,005	-				-0.8
4,568,005	-				-1.8
4,568,005	-				-1.1
4,568,005	-				-0.4
4,568,005	-				-1.4
4,568,015	-				-2.0
4,568,015	-				-1.1
4,568,034	+				-0.6
4,568,042	-				-1.1
4,568,107	+		SO4374	0.11	-0.7
4,568,151	+		SO4374	0.14	-1.2
4,568,171	+		SO4374	0.15	-0.9
4,568,176	+		SO4374	0.16	-1.6
4,568,179	-		SO4374	0.16	-0.8
4,568,189	+		SO4374	0.17	+0.2
4,568,227	-		SO4374	0.19	-0.2
4,568,244	-		SO4374	0.20	+0.7
4,568,244	-		SO4374	0.20	-1.1
4,568,388	-		SO4374	0.29	-1.3
4,568,409	-		SO4374	0.31	-0.3
4,568,495	-		SO4374	0.36	-1.0
4,568,536	+		SO4374	0.39	-0.1
4,568,545	-		SO4374	0.39	-1.3
4,568,563	-		SO4374	0.40	-1.9
4,568,587	+		SO4374	0.42	-0.9
4,568,590	-		SO4374	0.42	-1.3
4,568,643	+		SO4374	0.46	-0.1
4,568,651	+		SO4374	0.46	-0.7
4,568,671	-		SO4374	0.47	-0.9
4,568,671	-		SO4374	0.47	-2.1
4,568,700	+		SO4374	0.49	-0.5
4,568,764	-		SO4374	0.53	-3.5
4,568,965	+		SO4374	0.66	-1.3
4,569,029	-		SO4374	0.70	-1.0
4,569,093	-		SO4374	0.74	-0.5
4,569,110	+		SO4374	0.75	-0.6
4,569,110	+		SO4374	0.75	-1.6
4,569,110	+		SO4374	0.75	+0.5
4,569,118	-		SO4374	0.76	-0.7
4,569,332	+		SO4374	0.90	-1.3
4,569,362	+				+0.3
4,569,415	+				-1.2
4,569,445	+				+0.3
4,569,484	-				-3.4
4,569,535	+				+1.5
4,569,571	+		SO4375	0.18	-0.3
4,569,624	+		SO4375	0.30	-1.6
4,569,698	+		SO4375	0.47	-0.6
4,569,714	-		SO4375	0.51	-1.3
4,569,716	+		SO4375	0.51	-0.4
4,569,716	+		SO4375	0.51	-2.1
4,569,803	-		SO4375	0.71	-0.9
4,569,812	+		SO4375	0.74	-0.6
4,569,820	-		SO4375	0.75	-0.8
4,569,868	+		SO4375	0.86	-0.5
4,569,913	-				-0.5
4,569,986	+				-0.6
4,569,986	+				-0.3
4,569,994	-				-0.5
4,569,994	-				-1.4
4,569,994	-				-0.3
4,569,994	-				-0.8
4,569,994	-				-0.6
4,570,001	+				-0.3
4,570,004	-				-1.3
4,570,004	-				-0.3
4,570,004	-				-0.8
4,570,011	+		SO4376	0.11	-2.9
4,570,016	+		SO4376	0.11	-1.1
4,570,019	-		SO4376	0.12	-2.0
4,570,019	-		SO4376	0.12	-1.6
4,570,019	-		SO4376	0.12	-1.2
4,570,019	-		SO4376	0.12	-1.4
4,570,019	-		SO4376	0.12	-1.7
4,570,029	+		SO4376	0.13	-1.0
4,570,208	+		SO4376	0.34	+0.7
4,570,237	-		SO4376	0.38	-0.8
4,570,392	+		SO4376	0.56	-0.6
4,570,392	-		SO4376	0.56	-2.8
4,570,395	-		SO4376	0.57	-2.0
4,570,400	-		SO4376	0.57	-1.3
4,570,431	+		SO4376	0.61	-0.8