Strain Fitness in Shewanella oneidensis MR-1 around SO3564

Experiment: Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vancomycin 0.06 mg/ml
3,723,786	-				+0.1
3,723,786	-				-0.2
3,723,796	-				-0.2
3,723,796	-				+0.3
3,723,796	-				+0.4
3,723,800	+				-0.6
3,723,808	-				-0.4
3,723,831	-				-0.3
3,723,918	+				-1.5
3,723,918	+				-0.6
3,723,918	+				+0.2
3,723,918	+				-0.5
3,723,926	-				-0.4
3,724,062	+		SO3563	0.27	-0.2
3,724,062	+		SO3563	0.27	-0.4
3,724,277	+		SO3563	0.62	+0.6
3,724,285	-		SO3563	0.63	-0.6
3,724,289	-		SO3563	0.64	-3.2
3,724,338	+		SO3563	0.71	+0.6
3,724,338	+		SO3563	0.71	+0.4
3,724,350	+		SO3563	0.73	+0.3
3,724,454	+				+0.1
3,724,800	+				-0.4
3,724,846	-				-0.0
3,724,875	-				+0.5
3,724,881	+				+0.1
3,724,886	+				+0.5
3,724,932	-				+0.2
3,724,993	+	dcp-2	SO3564	0.12	-0.2
3,725,051	-	dcp-2	SO3564	0.15	+0.4
3,725,111	+	dcp-2	SO3564	0.17	-0.4
3,725,273	-	dcp-2	SO3564	0.25	+1.3
3,725,349	-	dcp-2	SO3564	0.28	-3.4
3,725,380	+	dcp-2	SO3564	0.30	-0.2
3,725,389	-	dcp-2	SO3564	0.30	+0.6
3,725,442	+	dcp-2	SO3564	0.33	-0.4
3,725,460	-	dcp-2	SO3564	0.34	+6.8
3,725,522	-	dcp-2	SO3564	0.37	-0.8
3,725,588	+	dcp-2	SO3564	0.40	+0.2
3,725,593	+	dcp-2	SO3564	0.40	+0.7
3,725,603	+	dcp-2	SO3564	0.40	+0.0
3,725,661	+	dcp-2	SO3564	0.43	+0.8
3,725,669	-	dcp-2	SO3564	0.43	+0.3
3,725,747	+	dcp-2	SO3564	0.47	-0.5
3,725,931	-	dcp-2	SO3564	0.56	-0.6
3,725,941	+	dcp-2	SO3564	0.56	-0.1
3,726,018	+	dcp-2	SO3564	0.60	-0.2
3,726,025	+	dcp-2	SO3564	0.60	+0.3
3,726,055	+	dcp-2	SO3564	0.61	+0.1
3,726,055	+	dcp-2	SO3564	0.61	-1.6
3,726,123	+	dcp-2	SO3564	0.64	-0.3
3,726,284	-	dcp-2	SO3564	0.72	+0.2
3,726,284	-	dcp-2	SO3564	0.72	+0.4
3,726,497	+	dcp-2	SO3564	0.82	+0.1
3,726,654	-	dcp-2	SO3564	0.89	+0.1
3,726,658	+	dcp-2	SO3564	0.89	-0.6
3,726,707	+				+0.6
3,726,716	-				-0.2
3,726,736	+				+0.0
3,726,744	-				-0.1
3,726,755	+				-2.1
3,726,755	+				-0.8
3,726,755	+				-1.6
3,726,763	-				-0.2
3,726,784	-				-0.4
3,726,800	-				-0.3
3,726,901	+				+0.4
3,726,901	+				+0.9
3,726,909	-				-0.4
3,726,993	+				-0.1
3,727,006	+				-0.5
3,727,016	+				-0.9
3,727,016	+				+0.8
3,727,016	+				-1.4
3,727,024	-				-0.8
3,727,080	-				+0.3
3,727,080	-				-0.0
3,727,080	-				+0.1
3,727,115	+				+1.0
3,727,115	+				-0.1
3,727,123	-				-1.9
3,727,356	-				-0.5
3,727,376	+				-1.6
3,727,400	+				-0.3
3,727,456	+				-1.0
3,727,461	+				-0.3
3,727,469	+				-0.5
3,727,469	+				-0.1
3,727,476	+				-1.9
3,727,476	+				+0.4
3,727,477	-				+1.9
3,727,477	-				+0.6
3,727,484	-				-1.6
3,727,489	-				+0.2
3,727,506	-				-1.3
3,727,604	+				-0.3
3,727,604	-				+0.6
3,727,604	-				-0.2
3,727,612	-				+0.3
3,727,612	-				-0.6
3,727,624	-				-0.0
3,727,679	+				+0.3
3,727,679	+				-0.1
3,727,687	-				-0.3
3,727,763	+				-0.8
3,727,777	+	cpdB	SO3565	0.10	+0.1
3,727,824	+	cpdB	SO3565	0.12	+0.2
3,727,824	+	cpdB	SO3565	0.12	-1.1
3,727,825	+	cpdB	SO3565	0.12	-1.8
3,727,832	-	cpdB	SO3565	0.13	+0.3
3,727,832	-	cpdB	SO3565	0.13	-0.4
3,727,832	-	cpdB	SO3565	0.13	-0.3
3,727,832	-	cpdB	SO3565	0.13	-0.1
3,727,833	-	cpdB	SO3565	0.13	-0.4