Strain Fitness in Shewanella oneidensis MR-1 around SO2853

Experiment: Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vancomycin 0.06 mg/ml
2,975,986	+				-0.8
2,975,986	-				-1.3
2,976,160	-				-1.8
2,976,162	+				-0.6
2,976,162	+				-0.3
2,976,170	-				-0.7
2,976,170	-				-0.5
2,976,184	-				-1.9
2,976,316	+		SO2852	0.20	-0.2
2,976,335	+		SO2852	0.23	-0.3
2,976,401	-		SO2852	0.33	-1.9
2,976,407	+		SO2852	0.33	+0.4
2,976,478	+		SO2852	0.44	-0.6
2,976,603	-		SO2852	0.63	+0.4
2,976,605	+		SO2852	0.63	+0.8
2,976,715	-		SO2852	0.79	-0.5
2,976,972	+				-2.5
2,977,060	+		SO2853	0.11	-2.3
2,977,068	-		SO2853	0.11	-1.8
2,977,087	+		SO2853	0.13	-1.0
2,977,102	-		SO2853	0.15	-1.3
2,977,111	+		SO2853	0.15	-1.6
2,977,142	+		SO2853	0.18	-2.4
2,977,222	+		SO2853	0.26	-0.5
2,977,292	+		SO2853	0.32	-0.1
2,977,300	-		SO2853	0.33	-0.6
2,977,315	-		SO2853	0.35	-1.3
2,977,322	-		SO2853	0.35	+1.2
2,977,322	-		SO2853	0.35	-2.0
2,977,405	-		SO2853	0.43	-1.6
2,977,429	+		SO2853	0.45	+0.6
2,977,429	+		SO2853	0.45	-1.8
2,977,462	+		SO2853	0.48	-3.0
2,977,561	-		SO2853	0.58	-0.6
2,977,705	+		SO2853	0.71	-1.0
2,977,825	+		SO2853	0.83	-1.5
2,977,873	+		SO2853	0.87	-2.8
2,977,873	+		SO2853	0.87	-0.3
2,977,881	-		SO2853	0.88	-1.4
2,977,913	-				-1.8
2,977,914	+				-2.4
2,977,932	-				+0.4
2,978,028	-				+0.5
2,978,076	+				-1.1
2,978,076	+				+0.6
2,978,084	-				-0.4
2,978,140	-		SO2854	0.16	-0.6
2,978,168	+		SO2854	0.20	-0.1
2,978,347	+		SO2854	0.50	+0.5
2,978,355	-		SO2854	0.52	-0.7
2,978,357	+		SO2854	0.52	-2.2
2,978,357	+		SO2854	0.52	-0.9
2,978,357	+		SO2854	0.52	-1.8
2,978,357	+		SO2854	0.52	+0.5
2,978,357	+		SO2854	0.52	-0.9
2,978,365	-		SO2854	0.53	-0.5
2,978,365	-		SO2854	0.53	-1.0
2,978,365	-		SO2854	0.53	-1.3
2,978,365	-		SO2854	0.53	-0.3
2,978,438	+		SO2854	0.65	-1.0
2,978,483	-		SO2854	0.73	-1.1
2,978,512	-		SO2854	0.78	+0.5
2,978,783	-				-1.0
2,978,850	-				-0.3
2,978,927	+		SO2855	0.13	-0.6
2,978,940	-		SO2855	0.16	-0.2
2,978,944	+		SO2855	0.16	+0.1
2,978,978	+		SO2855	0.23	-0.8
2,978,986	-		SO2855	0.24	+0.5