Strain Fitness in Shewanella oneidensis MR-1 around SO2680

Experiment: Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vancomycin 0.06 mg/ml
2,802,554	-		SO2679	0.38	+1.0
2,802,630	-		SO2679	0.43	-0.9
2,802,664	+		SO2679	0.45	-0.1
2,802,742	-		SO2679	0.50	+0.5
2,802,848	+		SO2679	0.57	-0.8
2,802,869	+		SO2679	0.58	-0.2
2,802,886	+		SO2679	0.59	-0.2
2,802,929	+		SO2679	0.62	+0.3
2,802,945	+		SO2679	0.63	-0.0
2,802,946	+		SO2679	0.63	-0.0
2,803,035	+		SO2679	0.69	-1.2
2,803,041	-		SO2679	0.69	-0.9
2,803,043	-		SO2679	0.69	+0.8
2,803,061	-		SO2679	0.70	+0.5
2,803,089	+		SO2679	0.72	+0.6
2,803,097	-		SO2679	0.73	+0.3
2,803,097	-		SO2679	0.73	-0.6
2,803,101	+		SO2679	0.73	+0.1
2,803,101	+		SO2679	0.73	+0.8
2,803,101	+		SO2679	0.73	+1.1
2,803,101	+		SO2679	0.73	+0.1
2,803,109	-		SO2679	0.73	-0.3
2,803,109	-		SO2679	0.73	-0.0
2,803,109	-		SO2679	0.73	-0.7
2,803,141	-		SO2679	0.75	-0.4
2,803,199	-		SO2679	0.79	-0.6
2,803,199	-		SO2679	0.79	-0.3
2,803,382	-				-1.1
2,803,394	+				-0.0
2,803,511	+				+0.7
2,803,582	-				-1.3
2,803,606	-				+0.3
2,803,661	+				-0.9
2,803,676	+				+2.3
2,803,692	-		SO2680	0.11	-0.9
2,803,830	-		SO2680	0.20	-0.3
2,803,927	+		SO2680	0.26	-0.2
2,803,928	-		SO2680	0.26	+0.7
2,803,946	-		SO2680	0.27	+0.6
2,803,993	+		SO2680	0.30	+0.2
2,804,001	-		SO2680	0.31	-0.5
2,804,029	+		SO2680	0.32	-0.0
2,804,143	-		SO2680	0.40	-0.6
2,804,241	+		SO2680	0.46	-0.2
2,804,352	-		SO2680	0.53	-0.6
2,804,352	-		SO2680	0.53	+1.1
2,804,369	+		SO2680	0.54	+0.1
2,804,616	-		SO2680	0.70	-0.1
2,804,621	+		SO2680	0.70	+0.6
2,804,644	+		SO2680	0.72	-2.6
2,804,644	+		SO2680	0.72	+0.3
2,804,681	-		SO2680	0.74	+1.0
2,804,697	-		SO2680	0.75	+0.3
2,804,735	-		SO2680	0.78	+0.9
2,804,802	+		SO2680	0.82	-0.5
2,804,802	+		SO2680	0.82	-0.4
2,804,810	-		SO2680	0.82	+0.5
2,804,849	+		SO2680	0.85	+0.3
2,804,962	+				-1.1
2,804,989	-				-0.4
2,805,140	-				+0.4
2,805,176	-		SO2681	0.13	-0.1
2,805,227	+		SO2681	0.20	-0.8
2,805,235	-		SO2681	0.21	-0.7
2,805,269	+		SO2681	0.25	-0.4
2,805,269	+		SO2681	0.25	+0.5
2,805,269	+		SO2681	0.25	+0.9
2,805,269	+		SO2681	0.25	-1.4
2,805,270	-		SO2681	0.25	-0.4
2,805,277	-				+0.3
2,805,368	-		SO2681	0.38	-0.8
2,805,368	-		SO2681	0.38	-0.7
2,805,393	+		SO2681	0.41	+0.4
2,805,434	+		SO2681	0.46	+0.1
2,805,528	+		SO2681	0.58	-0.4
2,805,633	-		SO2681	0.71	-1.8
2,805,682	-		SO2681	0.78	-0.8
2,805,711	+		SO2681	0.81	+1.1
2,805,765	+		SO2681	0.88	+0.2
2,805,773	-		SO2681	0.89	+0.2
2,806,077	+		SO2682	0.12	+0.6