Strain Fitness in Shewanella oneidensis MR-1 around SO1790

Experiment: Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmiaE and SO1789 are separated by 61 nucleotidesSO1789 and ppiB-1 are separated by 9 nucleotidesppiB-1 and cysS are separated by 140 nucleotides SO1788: miaE - tRNA-(MS[2]IO[6]A)-hydroxylase (NCBI ptt file), at 1,875,042 to 1,875,827 miaE SO1789: SO1789 - conserved hypothetical protein (NCBI ptt file), at 1,875,889 to 1,876,608 SO1789 SO1790: ppiB-1 - peptidyl-prolyl cis-trans isomerase B (NCBI ptt file), at 1,876,618 to 1,877,112 ppiB-1 SO1791: cysS - cysteinyl-tRNA synthetase (NCBI ptt file), at 1,877,253 to 1,878,632 cysS Position (kb) 1876 1877 1878Strain fitness (log2 ratio) -3 -2 -1 0 1at 1875.734 kb on - strand, within miaEat 1876.759 kb on - strand, within ppiB-1at 1876.827 kb on - strand, within ppiB-1

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.06 mg/ml
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1,875,734 - miaE SO1788 0.88 -0.8
1,876,759 - ppiB-1 SO1790 0.28 -2.8
1,876,827 - ppiB-1 SO1790 0.42 -2.0

Or see this region's nucleotide sequence