Strain Fitness in Shewanella oneidensis MR-1 around SO1780

Experiment: Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vancomycin 0.06 mg/ml
1,863,181	-	omcA	SO1779	0.68	-1.0
1,863,183	+	omcA	SO1779	0.68	-0.3
1,863,183	+	omcA	SO1779	0.68	-0.3
1,863,191	-	omcA	SO1779	0.68	+0.8
1,863,191	-	omcA	SO1779	0.68	-1.1
1,863,208	+	omcA	SO1779	0.69	+0.9
1,863,257	+	omcA	SO1779	0.71	-0.2
1,863,264	-	omcA	SO1779	0.71	+1.0
1,863,264	-	omcA	SO1779	0.71	+0.3
1,863,266	+	omcA	SO1779	0.71	-1.0
1,863,274	-	omcA	SO1779	0.72	-0.2
1,863,401	+	omcA	SO1779	0.77	-0.4
1,863,496	-	omcA	SO1779	0.82	+0.3
1,863,541	+	omcA	SO1779	0.84	+0.5
1,863,549	-	omcA	SO1779	0.84	+0.6
1,863,649	+	omcA	SO1779	0.89	-0.7
1,863,649	+	omcA	SO1779	0.89	-0.1
1,863,649	+	omcA	SO1779	0.89	-0.1
1,863,649	+	omcA	SO1779	0.89	+0.3
1,863,649	+	omcA	SO1779	0.89	+0.6
1,863,649	+	omcA	SO1779	0.89	-0.2
1,863,649	+	omcA	SO1779	0.89	+0.8
1,863,649	+	omcA	SO1779	0.89	+1.0
1,863,657	-	omcA	SO1779	0.89	+0.4
1,863,657	-	omcA	SO1779	0.89	+0.0
1,863,657	-	omcA	SO1779	0.89	-0.7
1,863,657	-	omcA	SO1779	0.89	+0.5
1,863,657	-	omcA	SO1779	0.89	+0.5
1,863,697	+				+0.6
1,863,714	-				+0.3
1,863,716	-				+2.6
1,863,864	-				+2.0
1,863,974	-				+0.6
1,863,992	+				+0.0
1,864,000	-				+1.0
1,864,123	+				-0.5
1,864,181	+				-0.7
1,864,190	-				-0.6
1,864,191	-				+0.6
1,864,248	+				-0.8
1,864,256	-				+0.1
1,864,256	-				-0.4
1,864,466	-	mtrF	SO1780	0.17	-0.4
1,864,813	+	mtrF	SO1780	0.35	-1.7
1,864,880	+	mtrF	SO1780	0.38	-0.7
1,865,020	+	mtrF	SO1780	0.46	+0.0
1,865,113	+	mtrF	SO1780	0.50	-0.1
1,865,113	+	mtrF	SO1780	0.50	-0.9
1,865,123	+	mtrF	SO1780	0.51	-0.4
1,865,123	+	mtrF	SO1780	0.51	-0.8
1,865,128	+	mtrF	SO1780	0.51	+0.8
1,865,195	+	mtrF	SO1780	0.55	-1.1
1,865,200	+	mtrF	SO1780	0.55	-0.0
1,865,208	-	mtrF	SO1780	0.55	-0.1
1,865,296	+	mtrF	SO1780	0.60	-0.1
1,865,316	+	mtrF	SO1780	0.61	-1.0
1,865,414	-	mtrF	SO1780	0.66	-0.5
1,865,433	-	mtrF	SO1780	0.67	-0.6
1,865,486	-	mtrF	SO1780	0.70	-1.1
1,865,566	-	mtrF	SO1780	0.74	-1.0
1,865,566	-	mtrF	SO1780	0.74	-1.3
1,865,568	+	mtrF	SO1780	0.74	-0.1
1,865,614	+	mtrF	SO1780	0.77	+0.1
1,865,807	+	mtrF	SO1780	0.87	-0.1
1,865,847	-	mtrF	SO1780	0.89	-1.2
1,865,900	+				+1.2
1,865,945	+				+0.4
1,866,029	-				+0.1
1,866,034	-				-0.9
1,866,034	-				+0.1
1,866,125	-				+1.6
1,866,288	+				-1.7
1,866,345	+		SO1781	0.12	-0.4
1,866,378	+		SO1781	0.13	-1.6
1,866,528	-		SO1781	0.20	+0.0
1,866,537	-		SO1781	0.20	-0.5
1,866,622	+		SO1781	0.24	-0.5
1,866,630	-		SO1781	0.25	-0.1
1,866,638	-		SO1781	0.25	-0.9
1,866,651	+		SO1781	0.26	-1.4
1,866,757	-		SO1781	0.31	+0.4
1,866,815	-		SO1781	0.33	+0.4
1,866,900	+		SO1781	0.37	+0.0
1,866,931	-		SO1781	0.39	+0.6
1,866,959	-		SO1781	0.40	+0.8
1,867,025	-		SO1781	0.43	+0.7