Experiment: Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0744 and SO0745 are separated by 215 nucleotides SO0745 and SO0746 are separated by 6 nucleotides SO0746 and fpr are separated by 65 nucleotides
SO0744: SO0744 - iron(III) ABC transporter, periplasmic iron(III)-binding protein (NCBI ptt file), at 762,286 to 763,293
SO0744
SO0745: SO0745 - hypothetical protein (NCBI ptt file), at 763,509 to 763,928
SO0745
SO0746: SO0746 - glutathione S-transferase family protein (NCBI ptt file), at 763,935 to 764,531
SO0746
SO0747: fpr - ferredoxin--NADP reductase (NCBI ptt file), at 764,597 to 765,346
fpr
Position (kb) 763
764 Strain fitness (log2 ratio) -2
-1
0
1
2 at 762.639 kb on + strand, within SO0744 at 762.649 kb on - strand, within SO0744 at 762.686 kb on + strand, within SO0744 at 762.694 kb on - strand, within SO0744 at 762.755 kb on + strand, within SO0744 at 762.763 kb on - strand, within SO0744 at 762.763 kb on - strand, within SO0744 at 762.775 kb on - strand, within SO0744 at 762.819 kb on + strand, within SO0744 at 762.985 kb on - strand, within SO0744 at 763.015 kb on + strand, within SO0744 at 763.179 kb on - strand, within SO0744 at 763.272 kb on - strand at 763.319 kb on + strand at 763.343 kb on - strand at 763.384 kb on - strand at 763.406 kb on - strand at 763.531 kb on + strand at 763.545 kb on - strand at 763.626 kb on + strand, within SO0745 at 763.634 kb on - strand, within SO0745 at 763.634 kb on - strand, within SO0745 at 763.636 kb on - strand, within SO0745 at 763.649 kb on - strand, within SO0745 at 763.698 kb on + strand, within SO0745 at 763.781 kb on - strand, within SO0745 at 763.811 kb on + strand, within SO0745 at 763.811 kb on + strand, within SO0745 at 763.898 kb on + strand at 763.906 kb on - strand at 763.932 kb on + strand at 763.940 kb on - strand at 763.979 kb on + strand at 764.067 kb on + strand, within SO0746 at 764.075 kb on - strand, within SO0746 at 764.236 kb on - strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.279 kb on - strand, within SO0746 at 764.279 kb on - strand, within SO0746 at 764.279 kb on - strand, within SO0746 at 764.279 kb on - strand, within SO0746 at 764.404 kb on - strand, within SO0746 at 764.416 kb on + strand, within SO0746 at 764.437 kb on + strand, within SO0746 at 764.496 kb on + strand at 764.497 kb on + strand at 764.497 kb on + strand at 764.505 kb on - strand at 764.510 kb on - strand at 764.682 kb on + strand, within fpr at 764.716 kb on + strand, within fpr at 764.778 kb on - strand, within fpr at 764.829 kb on + strand, within fpr at 764.829 kb on + strand, within fpr at 764.837 kb on - strand, within fpr at 764.897 kb on + strand, within fpr at 764.897 kb on + strand, within fpr at 764.899 kb on - strand, within fpr at 764.905 kb on - strand, within fpr at 764.916 kb on + strand, within fpr at 764.916 kb on + strand, within fpr at 764.916 kb on + strand, within fpr at 764.916 kb on + strand, within fpr at 764.916 kb on + strand, within fpr at 764.924 kb on - strand, within fpr at 764.924 kb on - strand, within fpr
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.06 mg/ml remove 762,639 + SO0744 0.35 +0.0 762,649 - SO0744 0.36 +0.3 762,686 + SO0744 0.40 -0.4 762,694 - SO0744 0.40 -0.3 762,755 + SO0744 0.47 +0.1 762,763 - SO0744 0.47 +0.9 762,763 - SO0744 0.47 -0.6 762,775 - SO0744 0.49 +0.3 762,819 + SO0744 0.53 +0.9 762,985 - SO0744 0.69 +0.7 763,015 + SO0744 0.72 -0.2 763,179 - SO0744 0.89 -0.5 763,272 - -0.1 763,319 + +0.1 763,343 - +1.8 763,384 - -0.2 763,406 - -0.9 763,531 + +0.9 763,545 - +0.3 763,626 + SO0745 0.28 -0.5 763,634 - SO0745 0.30 +0.6 763,634 - SO0745 0.30 +0.0 763,636 - SO0745 0.30 -0.5 763,649 - SO0745 0.33 -0.4 763,698 + SO0745 0.45 +0.0 763,781 - SO0745 0.65 -0.8 763,811 + SO0745 0.72 +0.8 763,811 + SO0745 0.72 -1.2 763,898 + -0.1 763,906 - -0.1 763,932 + +0.4 763,940 - +1.1 763,979 + +0.1 764,067 + SO0746 0.22 +0.7 764,075 - SO0746 0.23 -1.2 764,236 - SO0746 0.50 +0.1 764,271 + SO0746 0.56 +0.2 764,271 + SO0746 0.56 +0.0 764,271 + SO0746 0.56 -0.2 764,271 + SO0746 0.56 +0.6 764,271 + SO0746 0.56 +0.4 764,271 + SO0746 0.56 +0.1 764,279 - SO0746 0.58 +1.1 764,279 - SO0746 0.58 -0.1 764,279 - SO0746 0.58 -1.9 764,279 - SO0746 0.58 -1.4 764,404 - SO0746 0.79 +0.4 764,416 + SO0746 0.81 -0.8 764,437 + SO0746 0.84 -0.6 764,496 + -0.9 764,497 + -0.0 764,497 + +1.3 764,505 - -1.2 764,510 - +0.8 764,682 + fpr SO0747 0.11 -0.7 764,716 + fpr SO0747 0.16 -0.1 764,778 - fpr SO0747 0.24 -0.8 764,829 + fpr SO0747 0.31 -0.1 764,829 + fpr SO0747 0.31 -0.4 764,837 - fpr SO0747 0.32 -1.4 764,897 + fpr SO0747 0.40 -0.2 764,897 + fpr SO0747 0.40 +0.0 764,899 - fpr SO0747 0.40 -0.1 764,905 - fpr SO0747 0.41 +0.3 764,916 + fpr SO0747 0.43 +0.4 764,916 + fpr SO0747 0.43 -0.1 764,916 + fpr SO0747 0.43 +0.4 764,916 + fpr SO0747 0.43 -0.6 764,916 + fpr SO0747 0.43 -1.3 764,924 - fpr SO0747 0.44 -2.0 764,924 - fpr SO0747 0.44 -1.0
Or see this region's nucleotide sequence