Experiment: Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cinA and SO0273 are separated by 96 nucleotides SO0273 and ppc overlap by 1 nucleotides
SO0272: cinA - competence/damage-inducible protein CinA (NCBI ptt file), at 275,264 to 276,538
cinA
SO0273: SO0273 - conserved hypothetical protein (NCBI ptt file), at 276,635 to 277,180
SO0273
SO0274: ppc - phosphoenolpyruvate carboxylase (NCBI ptt file), at 277,180 to 279,825
ppc
Position (kb) 276
277
278 Strain fitness (log2 ratio) -1
0
1 at 275.678 kb on - strand, within cinA at 275.684 kb on - strand, within cinA at 275.704 kb on + strand, within cinA at 275.784 kb on - strand, within cinA at 275.835 kb on - strand, within cinA at 275.898 kb on + strand, within cinA at 275.992 kb on + strand, within cinA at 276.021 kb on - strand, within cinA at 276.093 kb on - strand, within cinA at 276.093 kb on - strand, within cinA at 276.144 kb on + strand, within cinA at 276.320 kb on + strand, within cinA at 276.569 kb on - strand at 276.778 kb on + strand, within SO0273 at 276.784 kb on - strand, within SO0273 at 276.864 kb on - strand, within SO0273 at 276.888 kb on + strand, within SO0273 at 276.903 kb on - strand, within SO0273 at 277.024 kb on + strand, within SO0273 at 277.102 kb on + strand, within SO0273 at 277.112 kb on + strand, within SO0273 at 277.112 kb on + strand, within SO0273 at 277.143 kb on - strand at 277.371 kb on - strand at 277.403 kb on - strand at 277.427 kb on - strand at 277.447 kb on - strand, within ppc at 277.514 kb on + strand, within ppc at 277.532 kb on + strand, within ppc at 277.655 kb on - strand, within ppc at 277.842 kb on + strand, within ppc at 277.907 kb on + strand, within ppc at 277.935 kb on - strand, within ppc at 277.939 kb on + strand, within ppc at 277.939 kb on + strand, within ppc at 277.939 kb on + strand, within ppc at 277.939 kb on + strand, within ppc at 277.940 kb on - strand, within ppc at 277.947 kb on - strand, within ppc at 277.947 kb on - strand, within ppc at 278.000 kb on - strand, within ppc at 278.163 kb on - strand, within ppc at 278.163 kb on - strand, within ppc
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.06 mg/ml remove 275,678 - cinA SO0272 0.32 +0.3 275,684 - cinA SO0272 0.33 -0.2 275,704 + cinA SO0272 0.35 -0.5 275,784 - cinA SO0272 0.41 -0.3 275,835 - cinA SO0272 0.45 +0.5 275,898 + cinA SO0272 0.50 -0.2 275,992 + cinA SO0272 0.57 +1.1 276,021 - cinA SO0272 0.59 -0.7 276,093 - cinA SO0272 0.65 +0.6 276,093 - cinA SO0272 0.65 +0.5 276,144 + cinA SO0272 0.69 -0.2 276,320 + cinA SO0272 0.83 -1.7 276,569 - -0.3 276,778 + SO0273 0.26 -1.4 276,784 - SO0273 0.27 -1.7 276,864 - SO0273 0.42 -1.6 276,888 + SO0273 0.46 +0.2 276,903 - SO0273 0.49 -0.8 277,024 + SO0273 0.71 -0.2 277,102 + SO0273 0.86 +0.2 277,112 + SO0273 0.87 -1.4 277,112 + SO0273 0.87 +0.3 277,143 - +0.4 277,371 - -0.0 277,403 - +0.3 277,427 - -1.7 277,447 - ppc SO0274 0.10 +0.2 277,514 + ppc SO0274 0.13 -0.2 277,532 + ppc SO0274 0.13 +0.8 277,655 - ppc SO0274 0.18 +0.0 277,842 + ppc SO0274 0.25 +0.2 277,907 + ppc SO0274 0.27 -0.5 277,935 - ppc SO0274 0.29 -0.3 277,939 + ppc SO0274 0.29 -1.4 277,939 + ppc SO0274 0.29 +0.2 277,939 + ppc SO0274 0.29 -1.0 277,939 + ppc SO0274 0.29 +0.7 277,940 - ppc SO0274 0.29 -0.8 277,947 - ppc SO0274 0.29 +0.5 277,947 - ppc SO0274 0.29 -0.3 278,000 - ppc SO0274 0.31 +0.5 278,163 - ppc SO0274 0.37 +0.3 278,163 - ppc SO0274 0.37 -1.0
Or see this region's nucleotide sequence