Experiment: Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0185 and SO0186 are separated by 28 nucleotides SO0186 and SO0187 are separated by 55 nucleotides SO0187 and SO0188 are separated by 2 nucleotides
SO0185: SO0185 - hypothetical microcystin dependent protein (NCBI ptt file), at 188,996 to 189,526
SO0185
SO0186: SO0186 - hypothetical microcystin dependent protein (NCBI ptt file), at 189,555 to 190,100
SO0186
SO0187: SO0187 - serine protease, subtilase family (NCBI ptt file), at 190,156 to 191,379
SO0187
SO0188: SO0188 - hypothetical protein (NCBI ptt file), at 191,382 to 192,473
SO0188
Position (kb) 190
191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 189.194 kb on + strand, within SO0185 at 189.196 kb on - strand, within SO0185 at 189.197 kb on - strand, within SO0185 at 189.206 kb on + strand, within SO0185 at 189.209 kb on - strand, within SO0185 at 189.350 kb on + strand, within SO0185 at 189.378 kb on - strand, within SO0185 at 189.378 kb on - strand, within SO0185 at 189.390 kb on + strand, within SO0185 at 189.390 kb on + strand, within SO0185 at 189.390 kb on + strand, within SO0185 at 189.398 kb on - strand, within SO0185 at 189.398 kb on - strand, within SO0185 at 189.398 kb on - strand, within SO0185 at 189.398 kb on - strand, within SO0185 at 189.446 kb on - strand, within SO0185 at 189.536 kb on + strand at 189.559 kb on - strand at 189.606 kb on + strand at 189.606 kb on - strand at 189.707 kb on - strand, within SO0186 at 189.709 kb on + strand, within SO0186 at 189.709 kb on + strand, within SO0186 at 189.743 kb on + strand, within SO0186 at 189.760 kb on + strand, within SO0186 at 189.774 kb on - strand, within SO0186 at 189.791 kb on + strand, within SO0186 at 189.791 kb on + strand, within SO0186 at 189.791 kb on + strand, within SO0186 at 189.791 kb on + strand, within SO0186 at 189.791 kb on + strand, within SO0186 at 189.791 kb on + strand, within SO0186 at 189.799 kb on - strand, within SO0186 at 189.799 kb on - strand, within SO0186 at 189.799 kb on - strand, within SO0186 at 189.799 kb on - strand, within SO0186 at 189.844 kb on + strand, within SO0186 at 189.846 kb on + strand, within SO0186 at 189.852 kb on - strand, within SO0186 at 189.852 kb on - strand, within SO0186 at 189.852 kb on - strand, within SO0186 at 189.929 kb on - strand, within SO0186 at 190.043 kb on - strand, within SO0186 at 190.076 kb on - strand at 190.077 kb on + strand at 190.087 kb on - strand at 190.133 kb on + strand at 190.158 kb on + strand at 190.277 kb on + strand at 190.346 kb on - strand, within SO0187 at 190.447 kb on + strand, within SO0187 at 190.455 kb on - strand, within SO0187 at 190.547 kb on + strand, within SO0187 at 190.547 kb on + strand, within SO0187 at 190.569 kb on + strand, within SO0187 at 190.575 kb on - strand, within SO0187 at 190.616 kb on + strand, within SO0187 at 190.688 kb on + strand, within SO0187 at 190.725 kb on - strand, within SO0187 at 190.838 kb on + strand, within SO0187 at 190.855 kb on + strand, within SO0187 at 190.863 kb on - strand, within SO0187 at 190.871 kb on - strand, within SO0187 at 190.907 kb on - strand, within SO0187 at 190.916 kb on + strand, within SO0187 at 190.956 kb on + strand, within SO0187 at 190.956 kb on + strand, within SO0187 at 190.971 kb on + strand, within SO0187 at 190.985 kb on + strand, within SO0187 at 191.032 kb on + strand, within SO0187 at 191.032 kb on + strand, within SO0187 at 191.040 kb on - strand, within SO0187 at 191.040 kb on - strand, within SO0187 at 191.047 kb on + strand, within SO0187 at 191.127 kb on - strand, within SO0187 at 191.197 kb on + strand, within SO0187 at 191.236 kb on + strand, within SO0187 at 191.330 kb on + strand at 191.355 kb on - strand at 191.363 kb on + strand at 191.610 kb on - strand, within SO0188 at 191.634 kb on + strand, within SO0188 at 191.635 kb on + strand, within SO0188 at 191.771 kb on + strand, within SO0188 at 191.829 kb on + strand, within SO0188 at 191.829 kb on + strand, within SO0188 at 191.829 kb on + strand, within SO0188 at 191.837 kb on - strand, within SO0188 at 191.888 kb on - strand, within SO0188 at 191.905 kb on + strand, within SO0188 at 191.921 kb on - strand, within SO0188 at 191.931 kb on + strand, within SO0188 at 191.939 kb on - strand, within SO0188 at 191.952 kb on - strand, within SO0188 at 191.952 kb on - strand, within SO0188 at 192.011 kb on + strand, within SO0188 at 192.099 kb on + strand, within SO0188 at 192.107 kb on - strand, within SO0188 at 192.107 kb on - strand, within SO0188 at 192.118 kb on + strand, within SO0188 at 192.118 kb on + strand, within SO0188 at 192.126 kb on - strand, within SO0188 at 192.160 kb on - strand, within SO0188 at 192.160 kb on - strand, within SO0188 at 192.160 kb on - strand, within SO0188 at 192.160 kb on - strand, within SO0188 at 192.265 kb on + strand, within SO0188 at 192.265 kb on + strand, within SO0188 at 192.275 kb on + strand, within SO0188 at 192.275 kb on - strand, within SO0188 at 192.291 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.06 mg/ml remove 189,194 + SO0185 0.37 -1.5 189,196 - SO0185 0.38 -0.7 189,197 - SO0185 0.38 -0.1 189,206 + SO0185 0.40 +0.4 189,209 - SO0185 0.40 -0.3 189,350 + SO0185 0.67 +0.3 189,378 - SO0185 0.72 +0.1 189,378 - SO0185 0.72 -0.7 189,390 + SO0185 0.74 +3.5 189,390 + SO0185 0.74 -0.1 189,390 + SO0185 0.74 +0.2 189,398 - SO0185 0.76 -1.0 189,398 - SO0185 0.76 -0.6 189,398 - SO0185 0.76 +0.9 189,398 - SO0185 0.76 -0.8 189,446 - SO0185 0.85 -0.2 189,536 + +1.0 189,559 - +0.9 189,606 + -0.3 189,606 - +0.4 189,707 - SO0186 0.28 -0.2 189,709 + SO0186 0.28 +0.1 189,709 + SO0186 0.28 +0.4 189,743 + SO0186 0.34 -1.3 189,760 + SO0186 0.38 +1.4 189,774 - SO0186 0.40 +1.0 189,791 + SO0186 0.43 +0.2 189,791 + SO0186 0.43 -1.6 189,791 + SO0186 0.43 -1.3 189,791 + SO0186 0.43 +0.7 189,791 + SO0186 0.43 +1.0 189,791 + SO0186 0.43 +0.1 189,799 - SO0186 0.45 +0.8 189,799 - SO0186 0.45 +1.5 189,799 - SO0186 0.45 -0.8 189,799 - SO0186 0.45 +0.1 189,844 + SO0186 0.53 -0.4 189,846 + SO0186 0.53 +0.3 189,852 - SO0186 0.54 -1.0 189,852 - SO0186 0.54 +0.9 189,852 - SO0186 0.54 +0.5 189,929 - SO0186 0.68 +0.2 190,043 - SO0186 0.89 -0.6 190,076 - +0.1 190,077 + +0.3 190,087 - -0.3 190,133 + -0.2 190,158 + -0.3 190,277 + +1.6 190,346 - SO0187 0.16 +0.1 190,447 + SO0187 0.24 +0.2 190,455 - SO0187 0.24 +0.5 190,547 + SO0187 0.32 +0.2 190,547 + SO0187 0.32 +0.3 190,569 + SO0187 0.34 -0.5 190,575 - SO0187 0.34 +0.7 190,616 + SO0187 0.38 -0.5 190,688 + SO0187 0.43 +0.5 190,725 - SO0187 0.46 +0.6 190,838 + SO0187 0.56 +0.9 190,855 + SO0187 0.57 +0.2 190,863 - SO0187 0.58 +0.5 190,871 - SO0187 0.58 +1.2 190,907 - SO0187 0.61 +3.5 190,916 + SO0187 0.62 +0.0 190,956 + SO0187 0.65 -0.8 190,956 + SO0187 0.65 -0.1 190,971 + SO0187 0.67 +0.7 190,985 + SO0187 0.68 +1.0 191,032 + SO0187 0.72 -0.1 191,032 + SO0187 0.72 -0.4 191,040 - SO0187 0.72 +0.1 191,040 - SO0187 0.72 +0.4 191,047 + SO0187 0.73 +0.9 191,127 - SO0187 0.79 +0.8 191,197 + SO0187 0.85 +0.5 191,236 + SO0187 0.88 +0.2 191,330 + +1.4 191,355 - -0.5 191,363 + +0.2 191,610 - SO0188 0.21 -0.2 191,634 + SO0188 0.23 +0.3 191,635 + SO0188 0.23 -0.7 191,771 + SO0188 0.36 +0.0 191,829 + SO0188 0.41 +0.0 191,829 + SO0188 0.41 -0.4 191,829 + SO0188 0.41 +0.1 191,837 - SO0188 0.42 +0.5 191,888 - SO0188 0.46 +1.2 191,905 + SO0188 0.48 -1.4 191,921 - SO0188 0.49 +0.1 191,931 + SO0188 0.50 -2.9 191,939 - SO0188 0.51 +0.4 191,952 - SO0188 0.52 -0.0 191,952 - SO0188 0.52 -0.2 192,011 + SO0188 0.58 +0.1 192,099 + SO0188 0.66 -0.3 192,107 - SO0188 0.66 -0.8 192,107 - SO0188 0.66 +0.5 192,118 + SO0188 0.67 -0.8 192,118 + SO0188 0.67 +0.3 192,126 - SO0188 0.68 +1.4 192,160 - SO0188 0.71 -0.2 192,160 - SO0188 0.71 -1.0 192,160 - SO0188 0.71 +0.4 192,160 - SO0188 0.71 +0.5 192,265 + SO0188 0.81 -0.4 192,265 + SO0188 0.81 -0.6 192,275 + SO0188 0.82 -0.9 192,275 - SO0188 0.82 -1.0 192,291 - +0.2
Or see this region's nucleotide sequence