Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0699 and Psest_0700 overlap by 13 nucleotides Psest_0700 and Psest_0701 are separated by 168 nucleotides
Psest_0699: Psest_0699 - alanine racemase, at 763,444 to 764,520
_0699
Psest_0700: Psest_0700 - diguanylate cyclase (GGDEF) domain, at 764,508 to 766,370
_0700
Psest_0701: Psest_0701 - uncharacterized radical SAM protein YgiQ, at 766,539 to 768,818
_0701
Position (kb) 764
765
766
767 Strain fitness (log2 ratio) -2
-1
0
1 at 764.581 kb on + strand at 764.605 kb on + strand at 764.605 kb on + strand at 764.605 kb on + strand at 764.605 kb on + strand at 764.605 kb on + strand at 764.606 kb on - strand at 764.606 kb on - strand at 764.606 kb on - strand at 764.606 kb on - strand at 765.202 kb on - strand, within Psest_0700 at 765.202 kb on - strand, within Psest_0700 at 765.361 kb on + strand, within Psest_0700 at 765.362 kb on - strand, within Psest_0700 at 765.362 kb on - strand, within Psest_0700 at 765.380 kb on - strand, within Psest_0700 at 765.380 kb on - strand, within Psest_0700 at 765.380 kb on - strand, within Psest_0700 at 765.505 kb on + strand, within Psest_0700 at 765.505 kb on + strand, within Psest_0700 at 765.505 kb on + strand, within Psest_0700 at 765.505 kb on + strand, within Psest_0700 at 765.506 kb on - strand, within Psest_0700 at 765.506 kb on - strand, within Psest_0700 at 765.724 kb on + strand, within Psest_0700 at 765.733 kb on + strand, within Psest_0700 at 765.734 kb on - strand, within Psest_0700 at 765.773 kb on - strand, within Psest_0700 at 765.799 kb on + strand, within Psest_0700 at 765.799 kb on + strand, within Psest_0700 at 765.799 kb on + strand, within Psest_0700 at 765.800 kb on - strand, within Psest_0700 at 765.895 kb on + strand, within Psest_0700 at 765.907 kb on + strand, within Psest_0700 at 765.907 kb on + strand, within Psest_0700 at 765.907 kb on + strand, within Psest_0700 at 765.907 kb on + strand, within Psest_0700 at 765.907 kb on + strand, within Psest_0700 at 765.908 kb on - strand, within Psest_0700 at 766.045 kb on + strand, within Psest_0700 at 766.046 kb on - strand, within Psest_0700 at 766.261 kb on + strand at 766.261 kb on + strand at 766.262 kb on - strand at 766.262 kb on - strand at 766.262 kb on - strand at 766.262 kb on - strand at 766.262 kb on - strand at 766.262 kb on - strand at 766.262 kb on - strand at 766.262 kb on - strand at 766.335 kb on + strand at 766.350 kb on + strand at 766.351 kb on - strand at 766.351 kb on - strand at 766.412 kb on + strand at 766.412 kb on + strand at 766.413 kb on - strand at 766.413 kb on - strand at 766.413 kb on - strand at 766.414 kb on + strand at 766.500 kb on + strand at 766.500 kb on + strand at 766.502 kb on + strand at 766.575 kb on + strand at 766.576 kb on - strand at 766.683 kb on + strand at 766.683 kb on + strand at 766.683 kb on + strand at 766.683 kb on + strand at 766.684 kb on - strand at 766.684 kb on - strand at 766.684 kb on - strand at 766.684 kb on - strand at 766.899 kb on + strand, within Psest_0701 at 766.950 kb on + strand, within Psest_0701 at 766.950 kb on + strand, within Psest_0701 at 766.950 kb on + strand, within Psest_0701 at 766.951 kb on - strand, within Psest_0701 at 766.974 kb on + strand, within Psest_0701 at 766.974 kb on + strand, within Psest_0701 at 766.974 kb on + strand, within Psest_0701 at 766.975 kb on - strand, within Psest_0701 at 766.975 kb on - strand, within Psest_0701 at 767.040 kb on + strand, within Psest_0701
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 764,581 + +0.4 764,605 + -1.5 764,605 + -0.2 764,605 + -1.0 764,605 + +0.5 764,605 + -0.0 764,606 - +1.4 764,606 - -0.0 764,606 - +0.6 764,606 - +0.9 765,202 - Psest_0700 0.37 -0.2 765,202 - Psest_0700 0.37 -0.2 765,361 + Psest_0700 0.46 +0.7 765,362 - Psest_0700 0.46 +0.2 765,362 - Psest_0700 0.46 +0.6 765,380 - Psest_0700 0.47 -0.7 765,380 - Psest_0700 0.47 +0.2 765,380 - Psest_0700 0.47 +0.9 765,505 + Psest_0700 0.54 +0.3 765,505 + Psest_0700 0.54 +1.3 765,505 + Psest_0700 0.54 +0.0 765,505 + Psest_0700 0.54 -0.7 765,506 - Psest_0700 0.54 -0.9 765,506 - Psest_0700 0.54 +0.3 765,724 + Psest_0700 0.65 +0.8 765,733 + Psest_0700 0.66 +0.2 765,734 - Psest_0700 0.66 +0.6 765,773 - Psest_0700 0.68 -0.7 765,799 + Psest_0700 0.69 +0.4 765,799 + Psest_0700 0.69 +0.1 765,799 + Psest_0700 0.69 +0.7 765,800 - Psest_0700 0.69 +0.3 765,895 + Psest_0700 0.74 +1.0 765,907 + Psest_0700 0.75 -0.1 765,907 + Psest_0700 0.75 -0.4 765,907 + Psest_0700 0.75 +0.5 765,907 + Psest_0700 0.75 +0.4 765,907 + Psest_0700 0.75 +0.6 765,908 - Psest_0700 0.75 +1.2 766,045 + Psest_0700 0.83 +0.3 766,046 - Psest_0700 0.83 +0.0 766,261 + -0.2 766,261 + +0.0 766,262 - -1.2 766,262 - -0.5 766,262 - +0.8 766,262 - -0.7 766,262 - -0.8 766,262 - -0.2 766,262 - +0.0 766,262 - -0.1 766,335 + +0.3 766,350 + +0.5 766,351 - +0.0 766,351 - +1.0 766,412 + -0.8 766,412 + +0.7 766,413 - +1.4 766,413 - -0.6 766,413 - +0.1 766,414 + -0.1 766,500 + -0.4 766,500 + -1.6 766,502 + -0.1 766,575 + +0.3 766,576 - +0.7 766,683 + +0.2 766,683 + -0.3 766,683 + +0.1 766,683 + -1.2 766,684 - +0.1 766,684 - +0.5 766,684 - +1.3 766,684 - -1.6 766,899 + Psest_0701 0.16 -2.2 766,950 + Psest_0701 0.18 +0.3 766,950 + Psest_0701 0.18 +0.2 766,950 + Psest_0701 0.18 -0.4 766,951 - Psest_0701 0.18 +0.0 766,974 + Psest_0701 0.19 -0.6 766,974 + Psest_0701 0.19 +1.0 766,974 + Psest_0701 0.19 +0.1 766,975 - Psest_0701 0.19 +1.6 766,975 - Psest_0701 0.19 +0.5 767,040 + Psest_0701 0.22 -0.8
Or see this region's nucleotide sequence