Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0441

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0439 and Psest_0440 are separated by 188 nucleotidesPsest_0440 and Psest_0441 are separated by 178 nucleotidesPsest_0441 and Psest_0442 are separated by 25 nucleotides Psest_0439: Psest_0439 - hypothetical protein, at 477,613 to 479,055 _0439 Psest_0440: Psest_0440 - hypothetical protein, at 479,244 to 479,558 _0440 Psest_0441: Psest_0441 - Subtilisin-like serine proteases, at 479,737 to 482,166 _0441 Psest_0442: Psest_0442 - ATPases of the AAA+ class, at 482,192 to 483,178 _0442 Position (kb) 479 480 481 482 483Strain fitness (log2 ratio) -2 -1 0 1 2at 478.917 kb on + strandat 478.918 kb on - strandat 478.918 kb on - strandat 478.969 kb on + strandat 478.969 kb on + strandat 479.043 kb on + strandat 479.043 kb on + strandat 479.044 kb on - strandat 479.044 kb on - strandat 479.044 kb on - strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.053 kb on + strandat 479.054 kb on - strandat 479.054 kb on - strandat 479.054 kb on - strandat 479.054 kb on - strandat 479.058 kb on - strandat 479.086 kb on - strandat 479.147 kb on + strandat 479.147 kb on + strandat 479.147 kb on + strandat 479.162 kb on + strandat 479.162 kb on + strandat 479.163 kb on - strandat 479.163 kb on - strandat 479.192 kb on + strandat 479.192 kb on + strandat 479.193 kb on - strandat 479.224 kb on + strandat 479.224 kb on + strandat 479.225 kb on - strandat 479.225 kb on - strandat 479.258 kb on + strandat 479.259 kb on - strandat 479.437 kb on + strand, within Psest_0440at 479.437 kb on + strand, within Psest_0440at 479.437 kb on + strand, within Psest_0440at 479.437 kb on + strand, within Psest_0440at 479.438 kb on - strand, within Psest_0440at 479.438 kb on - strand, within Psest_0440at 479.556 kb on + strandat 479.556 kb on + strandat 479.556 kb on + strandat 479.557 kb on - strandat 479.557 kb on - strandat 479.557 kb on - strandat 479.557 kb on - strandat 479.557 kb on - strandat 479.603 kb on + strandat 479.603 kb on + strandat 479.604 kb on - strandat 479.658 kb on - strandat 479.690 kb on + strandat 479.691 kb on - strandat 479.691 kb on - strandat 479.691 kb on - strandat 479.711 kb on + strandat 479.712 kb on - strandat 479.712 kb on - strandat 479.712 kb on - strandat 479.731 kb on + strandat 479.860 kb on + strandat 479.860 kb on + strandat 479.860 kb on + strandat 479.860 kb on + strandat 479.860 kb on + strandat 479.861 kb on - strandat 479.861 kb on - strandat 479.879 kb on + strandat 479.880 kb on - strandat 480.082 kb on - strand, within Psest_0441at 480.129 kb on - strand, within Psest_0441at 480.150 kb on - strand, within Psest_0441at 480.150 kb on - strand, within Psest_0441at 480.150 kb on - strand, within Psest_0441at 480.231 kb on - strand, within Psest_0441at 480.301 kb on + strand, within Psest_0441at 480.302 kb on - strand, within Psest_0441at 480.302 kb on - strand, within Psest_0441at 480.302 kb on - strand, within Psest_0441at 480.343 kb on + strand, within Psest_0441at 480.344 kb on - strand, within Psest_0441at 480.394 kb on - strand, within Psest_0441at 480.405 kb on - strand, within Psest_0441at 480.438 kb on + strand, within Psest_0441at 480.439 kb on - strand, within Psest_0441at 480.455 kb on + strand, within Psest_0441at 480.455 kb on + strand, within Psest_0441at 480.455 kb on + strand, within Psest_0441at 480.456 kb on - strand, within Psest_0441at 480.486 kb on + strand, within Psest_0441at 480.486 kb on + strand, within Psest_0441at 480.486 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.542 kb on + strand, within Psest_0441at 480.543 kb on - strand, within Psest_0441at 480.543 kb on - strand, within Psest_0441at 480.543 kb on - strand, within Psest_0441at 480.543 kb on - strand, within Psest_0441at 480.543 kb on - strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.612 kb on + strand, within Psest_0441at 480.613 kb on - strand, within Psest_0441at 480.613 kb on - strand, within Psest_0441at 480.613 kb on - strand, within Psest_0441at 480.613 kb on - strand, within Psest_0441at 480.616 kb on + strand, within Psest_0441at 480.616 kb on + strand, within Psest_0441at 480.616 kb on + strand, within Psest_0441at 480.616 kb on + strand, within Psest_0441at 480.616 kb on + strand, within Psest_0441at 480.617 kb on - strand, within Psest_0441at 480.794 kb on + strand, within Psest_0441at 480.900 kb on - strand, within Psest_0441at 480.990 kb on + strand, within Psest_0441at 480.991 kb on - strand, within Psest_0441at 481.019 kb on + strand, within Psest_0441at 481.020 kb on - strand, within Psest_0441at 481.020 kb on - strand, within Psest_0441at 481.059 kb on + strand, within Psest_0441at 481.059 kb on + strand, within Psest_0441at 481.059 kb on + strand, within Psest_0441at 481.059 kb on + strand, within Psest_0441at 481.059 kb on + strand, within Psest_0441at 481.060 kb on - strand, within Psest_0441at 481.060 kb on - strand, within Psest_0441at 481.060 kb on - strand, within Psest_0441at 481.109 kb on + strand, within Psest_0441at 481.110 kb on - strand, within Psest_0441at 481.110 kb on - strand, within Psest_0441at 481.110 kb on - strand, within Psest_0441at 481.154 kb on + strand, within Psest_0441at 481.154 kb on + strand, within Psest_0441at 481.155 kb on - strand, within Psest_0441at 481.155 kb on - strand, within Psest_0441at 481.249 kb on + strand, within Psest_0441at 481.250 kb on - strand, within Psest_0441at 481.250 kb on - strand, within Psest_0441at 481.250 kb on - strand, within Psest_0441at 481.259 kb on + strand, within Psest_0441at 481.259 kb on + strand, within Psest_0441at 481.284 kb on + strand, within Psest_0441at 481.284 kb on + strand, within Psest_0441at 481.284 kb on + strand, within Psest_0441at 481.285 kb on - strand, within Psest_0441at 481.285 kb on - strand, within Psest_0441at 481.285 kb on - strand, within Psest_0441at 481.426 kb on + strand, within Psest_0441at 481.427 kb on - strand, within Psest_0441at 481.427 kb on - strand, within Psest_0441at 481.427 kb on - strand, within Psest_0441at 481.438 kb on + strand, within Psest_0441at 481.528 kb on + strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.529 kb on - strand, within Psest_0441at 481.563 kb on - strand, within Psest_0441at 481.602 kb on + strand, within Psest_0441at 481.602 kb on + strand, within Psest_0441at 481.602 kb on + strand, within Psest_0441at 481.602 kb on + strand, within Psest_0441at 481.603 kb on - strand, within Psest_0441at 481.603 kb on - strand, within Psest_0441at 481.603 kb on - strand, within Psest_0441at 481.645 kb on + strand, within Psest_0441at 481.669 kb on + strand, within Psest_0441at 481.670 kb on - strand, within Psest_0441at 481.670 kb on - strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.673 kb on + strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.674 kb on - strand, within Psest_0441at 481.684 kb on + strand, within Psest_0441at 481.684 kb on + strand, within Psest_0441at 481.684 kb on + strand, within Psest_0441at 481.805 kb on + strand, within Psest_0441at 481.805 kb on + strand, within Psest_0441at 481.805 kb on + strand, within Psest_0441at 481.805 kb on + strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.806 kb on - strand, within Psest_0441at 481.825 kb on - strand, within Psest_0441at 481.982 kb on + strandat 481.992 kb on + strandat 481.993 kb on - strandat 481.993 kb on - strandat 482.034 kb on + strandat 482.034 kb on + strandat 482.034 kb on + strandat 482.042 kb on + strandat 482.042 kb on + strandat 482.157 kb on - strandat 482.291 kb on + strand, within Psest_0442at 482.291 kb on + strand, within Psest_0442at 482.293 kb on + strand, within Psest_0442at 482.552 kb on + strand, within Psest_0442at 482.552 kb on + strand, within Psest_0442at 482.753 kb on + strand, within Psest_0442at 482.753 kb on + strand, within Psest_0442at 482.821 kb on + strand, within Psest_0442at 482.864 kb on + strand, within Psest_0442at 482.873 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.923 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.933 kb on + strand, within Psest_0442at 482.979 kb on + strand, within Psest_0442at 482.979 kb on + strand, within Psest_0442at 482.998 kb on + strand, within Psest_0442at 482.998 kb on + strand, within Psest_0442at 483.001 kb on + strand, within Psest_0442at 483.001 kb on + strand, within Psest_0442at 483.091 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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478,917 + +0.3
478,918 - +0.3
478,918 - -0.4
478,969 + +0.3
478,969 + +1.1
479,043 + -0.8
479,043 + -0.1
479,044 - +0.3
479,044 - +0.1
479,044 - +0.9
479,053 + +0.2
479,053 + -0.1
479,053 + -0.4
479,053 + -1.4
479,053 + +0.1
479,053 + +0.2
479,053 + +0.0
479,053 + +0.2
479,053 + +0.0
479,053 + +0.4
479,053 + +0.3
479,054 - +1.6
479,054 - +0.7
479,054 - -1.7
479,054 - -1.4
479,058 - +0.8
479,086 - +0.6
479,147 + -0.6
479,147 + -0.7
479,147 + -0.2
479,162 + +1.1
479,162 + +0.5
479,163 - +0.5
479,163 - +0.1
479,192 + -0.5
479,192 + +0.4
479,193 - +0.5
479,224 + -0.0
479,224 + +0.0
479,225 - -0.8
479,225 - -0.6
479,258 + +1.3
479,259 - -1.0
479,437 + Psest_0440 0.61 +0.2
479,437 + Psest_0440 0.61 +1.3
479,437 + Psest_0440 0.61 +0.3
479,437 + Psest_0440 0.61 +0.1
479,438 - Psest_0440 0.62 -0.7
479,438 - Psest_0440 0.62 +0.6
479,556 + -0.4
479,556 + +0.3
479,556 + +0.3
479,557 - +0.0
479,557 - +0.9
479,557 - -0.4
479,557 - +0.6
479,557 - -0.2
479,603 + +0.4
479,603 + +0.2
479,604 - -0.3
479,658 - +0.3
479,690 + -0.3
479,691 - -0.5
479,691 - +0.0
479,691 - -1.0
479,711 + -1.7
479,712 - -0.3
479,712 - +0.7
479,712 - -0.2
479,731 + +0.0
479,860 + -0.1
479,860 + +0.4
479,860 + -1.2
479,860 + -0.3
479,860 + +1.3
479,861 - +0.4
479,861 - +0.0
479,879 + -0.6
479,880 - -0.4
480,082 - Psest_0441 0.14 +0.2
480,129 - Psest_0441 0.16 -0.2
480,150 - Psest_0441 0.17 +1.2
480,150 - Psest_0441 0.17 +1.3
480,150 - Psest_0441 0.17 +0.6
480,231 - Psest_0441 0.20 +0.4
480,301 + Psest_0441 0.23 -0.4
480,302 - Psest_0441 0.23 +0.0
480,302 - Psest_0441 0.23 +0.2
480,302 - Psest_0441 0.23 +0.2
480,343 + Psest_0441 0.25 -0.3
480,344 - Psest_0441 0.25 +0.0
480,394 - Psest_0441 0.27 +1.0
480,405 - Psest_0441 0.27 -1.0
480,438 + Psest_0441 0.29 +0.1
480,439 - Psest_0441 0.29 -0.5
480,455 + Psest_0441 0.30 +0.6
480,455 + Psest_0441 0.30 +0.8
480,455 + Psest_0441 0.30 +0.9
480,456 - Psest_0441 0.30 +0.3
480,486 + Psest_0441 0.31 -0.2
480,486 + Psest_0441 0.31 -0.3
480,486 + Psest_0441 0.31 -0.3
480,542 + Psest_0441 0.33 +1.0
480,542 + Psest_0441 0.33 -0.2
480,542 + Psest_0441 0.33 +0.1
480,542 + Psest_0441 0.33 +0.6
480,542 + Psest_0441 0.33 +0.1
480,542 + Psest_0441 0.33 -0.4
480,542 + Psest_0441 0.33 -0.9
480,542 + Psest_0441 0.33 -0.1
480,542 + Psest_0441 0.33 +0.8
480,542 + Psest_0441 0.33 +0.6
480,542 + Psest_0441 0.33 -0.5
480,542 + Psest_0441 0.33 +0.4
480,542 + Psest_0441 0.33 +0.2
480,542 + Psest_0441 0.33 +0.7
480,542 + Psest_0441 0.33 +0.0
480,542 + Psest_0441 0.33 +1.2
480,542 + Psest_0441 0.33 -0.1
480,542 + Psest_0441 0.33 +1.0
480,542 + Psest_0441 0.33 +0.1
480,542 + Psest_0441 0.33 +1.0
480,542 + Psest_0441 0.33 +0.4
480,542 + Psest_0441 0.33 +1.4
480,542 + Psest_0441 0.33 -0.4
480,543 - Psest_0441 0.33 -0.2
480,543 - Psest_0441 0.33 +1.3
480,543 - Psest_0441 0.33 +1.1
480,543 - Psest_0441 0.33 +0.6
480,543 - Psest_0441 0.33 +0.3
480,612 + Psest_0441 0.36 +0.2
480,612 + Psest_0441 0.36 -0.3
480,612 + Psest_0441 0.36 +0.0
480,612 + Psest_0441 0.36 +0.2
480,612 + Psest_0441 0.36 +0.2
480,612 + Psest_0441 0.36 +0.3
480,612 + Psest_0441 0.36 +0.6
480,612 + Psest_0441 0.36 +0.3
480,612 + Psest_0441 0.36 -0.3
480,612 + Psest_0441 0.36 -0.5
480,612 + Psest_0441 0.36 +0.0
480,612 + Psest_0441 0.36 -0.1
480,612 + Psest_0441 0.36 -0.1
480,612 + Psest_0441 0.36 +0.6
480,613 - Psest_0441 0.36 -1.1
480,613 - Psest_0441 0.36 +0.2
480,613 - Psest_0441 0.36 +0.8
480,613 - Psest_0441 0.36 +1.0
480,616 + Psest_0441 0.36 +0.9
480,616 + Psest_0441 0.36 -1.7
480,616 + Psest_0441 0.36 -0.1
480,616 + Psest_0441 0.36 -0.2
480,616 + Psest_0441 0.36 +0.4
480,617 - Psest_0441 0.36 +0.2
480,794 + Psest_0441 0.43 +0.9
480,900 - Psest_0441 0.48 +0.6
480,990 + Psest_0441 0.52 -0.7
480,991 - Psest_0441 0.52 +0.6
481,019 + Psest_0441 0.53 -1.4
481,020 - Psest_0441 0.53 +1.3
481,020 - Psest_0441 0.53 -1.7
481,059 + Psest_0441 0.54 +0.2
481,059 + Psest_0441 0.54 +0.5
481,059 + Psest_0441 0.54 +0.6
481,059 + Psest_0441 0.54 +0.2
481,059 + Psest_0441 0.54 +0.2
481,060 - Psest_0441 0.54 +0.4
481,060 - Psest_0441 0.54 +0.3
481,060 - Psest_0441 0.54 +2.6
481,109 + Psest_0441 0.56 -0.2
481,110 - Psest_0441 0.57 -1.6
481,110 - Psest_0441 0.57 +2.4
481,110 - Psest_0441 0.57 +2.3
481,154 + Psest_0441 0.58 -0.1
481,154 + Psest_0441 0.58 -0.1
481,155 - Psest_0441 0.58 -0.5
481,155 - Psest_0441 0.58 +0.7
481,249 + Psest_0441 0.62 +0.7
481,250 - Psest_0441 0.62 -0.8
481,250 - Psest_0441 0.62 +0.9
481,250 - Psest_0441 0.62 +0.4
481,259 + Psest_0441 0.63 +1.0
481,259 + Psest_0441 0.63 +1.0
481,284 + Psest_0441 0.64 -0.5
481,284 + Psest_0441 0.64 +2.1
481,284 + Psest_0441 0.64 -0.9
481,285 - Psest_0441 0.64 +0.3
481,285 - Psest_0441 0.64 -1.1
481,285 - Psest_0441 0.64 +0.5
481,426 + Psest_0441 0.70 -0.5
481,427 - Psest_0441 0.70 -0.0
481,427 - Psest_0441 0.70 +0.3
481,427 - Psest_0441 0.70 -1.7
481,438 + Psest_0441 0.70 -0.3
481,528 + Psest_0441 0.74 -0.5
481,529 - Psest_0441 0.74 -0.2
481,529 - Psest_0441 0.74 +0.5
481,529 - Psest_0441 0.74 -0.7
481,529 - Psest_0441 0.74 +0.5
481,529 - Psest_0441 0.74 -0.1
481,563 - Psest_0441 0.75 -0.9
481,602 + Psest_0441 0.77 +1.6
481,602 + Psest_0441 0.77 +0.8
481,602 + Psest_0441 0.77 +0.0
481,602 + Psest_0441 0.77 -0.4
481,603 - Psest_0441 0.77 +0.3
481,603 - Psest_0441 0.77 -0.8
481,603 - Psest_0441 0.77 -0.5
481,645 + Psest_0441 0.79 +0.6
481,669 + Psest_0441 0.80 +1.9
481,670 - Psest_0441 0.80 +1.2
481,670 - Psest_0441 0.80 +1.1
481,673 + Psest_0441 0.80 -0.8
481,673 + Psest_0441 0.80 +1.0
481,673 + Psest_0441 0.80 +0.4
481,673 + Psest_0441 0.80 +0.1
481,673 + Psest_0441 0.80 -0.8
481,673 + Psest_0441 0.80 +0.0
481,673 + Psest_0441 0.80 +0.3
481,674 - Psest_0441 0.80 +0.0
481,674 - Psest_0441 0.80 -0.0
481,674 - Psest_0441 0.80 +0.8
481,674 - Psest_0441 0.80 +1.1
481,674 - Psest_0441 0.80 +0.1
481,684 + Psest_0441 0.80 +1.9
481,684 + Psest_0441 0.80 -0.8
481,684 + Psest_0441 0.80 +1.4
481,805 + Psest_0441 0.85 +0.5
481,805 + Psest_0441 0.85 +0.0
481,805 + Psest_0441 0.85 -0.2
481,805 + Psest_0441 0.85 +1.2
481,806 - Psest_0441 0.85 +0.7
481,806 - Psest_0441 0.85 +0.1
481,806 - Psest_0441 0.85 +0.3
481,806 - Psest_0441 0.85 +0.0
481,806 - Psest_0441 0.85 +1.6
481,825 - Psest_0441 0.86 +0.5
481,982 + -0.2
481,992 + +0.3
481,993 - -0.7
481,993 - +0.2
482,034 + +0.5
482,034 + -0.0
482,034 + -0.2
482,042 + -1.1
482,042 + -0.7
482,157 - +0.6
482,291 + Psest_0442 0.10 -0.4
482,291 + Psest_0442 0.10 -0.6
482,293 + Psest_0442 0.10 +0.2
482,552 + Psest_0442 0.36 +0.2
482,552 + Psest_0442 0.36 -2.4
482,753 + Psest_0442 0.57 -1.0
482,753 + Psest_0442 0.57 -0.3
482,821 + Psest_0442 0.64 -0.7
482,864 + Psest_0442 0.68 -0.7
482,873 + Psest_0442 0.69 -0.1
482,923 + Psest_0442 0.74 +0.3
482,923 + Psest_0442 0.74 +0.0
482,923 + Psest_0442 0.74 -1.1
482,923 + Psest_0442 0.74 -0.7
482,933 + Psest_0442 0.75 -0.3
482,933 + Psest_0442 0.75 -2.6
482,933 + Psest_0442 0.75 -1.0
482,933 + Psest_0442 0.75 +0.0
482,933 + Psest_0442 0.75 -1.7
482,979 + Psest_0442 0.80 -0.3
482,979 + Psest_0442 0.80 -0.6
482,998 + Psest_0442 0.82 -2.3
482,998 + Psest_0442 0.82 +0.6
483,001 + Psest_0442 0.82 -0.9
483,001 + Psest_0442 0.82 -1.4
483,091 + +0.1

Or see this region's nucleotide sequence