Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0348 and Psest_0349 are separated by 178 nucleotides Psest_0349 and Psest_0350 overlap by 4 nucleotides Psest_0350 and Psest_0351 are separated by 181 nucleotides Psest_0351 and Psest_0352 are separated by 11 nucleotides
Psest_0348: Psest_0348 - hypothetical protein, at 372,098 to 372,616
_0348
Psest_0349: Psest_0349 - DNA polymerase III, alpha subunit (gram-positive type), at 372,795 to 373,502
_0349
Psest_0350: Psest_0350 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 373,499 to 375,433
_0350
Psest_0351: Psest_0351 - hypothetical protein, at 375,615 to 376,019
_0351
Psest_0352: Psest_0352 - hypothetical protein, at 376,031 to 377,200
_0352
Position (kb) 373
374
375
376 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 372.587 kb on + strand at 372.587 kb on + strand at 372.588 kb on - strand at 372.595 kb on + strand at 372.596 kb on - strand at 372.596 kb on - strand at 372.596 kb on - strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.760 kb on - strand at 372.760 kb on - strand at 372.760 kb on - strand at 372.959 kb on + strand, within Psest_0349 at 372.973 kb on + strand, within Psest_0349 at 372.973 kb on + strand, within Psest_0349 at 372.973 kb on + strand, within Psest_0349 at 372.974 kb on - strand, within Psest_0349 at 373.023 kb on + strand, within Psest_0349 at 373.023 kb on + strand, within Psest_0349 at 373.023 kb on + strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.289 kb on - strand, within Psest_0349 at 373.384 kb on - strand, within Psest_0349 at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.677 kb on + strand at 373.677 kb on + strand at 373.677 kb on + strand at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.274 kb on + strand, within Psest_0350 at 374.275 kb on - strand, within Psest_0350 at 374.673 kb on + strand, within Psest_0350 at 374.673 kb on + strand, within Psest_0350 at 374.673 kb on + strand, within Psest_0350 at 374.673 kb on + strand, within Psest_0350 at 374.673 kb on + strand, within Psest_0350 at 374.673 kb on + strand, within Psest_0350 at 374.674 kb on - strand, within Psest_0350 at 374.674 kb on - strand, within Psest_0350 at 374.674 kb on - strand, within Psest_0350 at 374.674 kb on - strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.225 kb on + strand, within Psest_0350 at 375.226 kb on - strand, within Psest_0350 at 375.226 kb on - strand, within Psest_0350 at 375.226 kb on - strand, within Psest_0350 at 375.226 kb on - strand, within Psest_0350 at 375.279 kb on + strand at 375.279 kb on + strand at 375.279 kb on + strand at 375.279 kb on + strand at 375.279 kb on + strand at 375.279 kb on + strand at 375.280 kb on - strand at 375.280 kb on - strand at 375.280 kb on - strand at 375.348 kb on + strand at 375.348 kb on + strand at 375.348 kb on + strand at 375.349 kb on - strand at 375.349 kb on - strand at 375.349 kb on - strand at 375.349 kb on - strand at 375.349 kb on - strand at 375.379 kb on + strand at 375.380 kb on - strand at 375.389 kb on + strand at 375.389 kb on + strand at 375.492 kb on + strand at 375.492 kb on + strand at 375.492 kb on + strand at 375.493 kb on - strand at 375.560 kb on - strand at 375.562 kb on + strand at 375.562 kb on + strand at 375.562 kb on + strand at 375.562 kb on + strand at 375.562 kb on + strand at 375.562 kb on + strand at 375.563 kb on - strand at 375.563 kb on - strand at 375.563 kb on - strand at 375.563 kb on - strand at 375.571 kb on - strand at 375.598 kb on + strand at 375.598 kb on + strand at 375.670 kb on + strand, within Psest_0351 at 375.671 kb on - strand, within Psest_0351 at 375.708 kb on + strand, within Psest_0351 at 375.775 kb on + strand, within Psest_0351 at 375.775 kb on + strand, within Psest_0351 at 375.817 kb on + strand, within Psest_0351 at 375.817 kb on + strand, within Psest_0351 at 375.817 kb on + strand, within Psest_0351 at 375.817 kb on + strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 375.818 kb on - strand, within Psest_0351 at 376.038 kb on - strand at 376.074 kb on + strand at 376.074 kb on + strand at 376.075 kb on - strand at 376.075 kb on - strand at 376.075 kb on - strand at 376.075 kb on - strand at 376.194 kb on + strand, within Psest_0352 at 376.194 kb on + strand, within Psest_0352 at 376.194 kb on + strand, within Psest_0352 at 376.194 kb on + strand, within Psest_0352 at 376.195 kb on - strand, within Psest_0352 at 376.195 kb on - strand, within Psest_0352 at 376.195 kb on - strand, within Psest_0352 at 376.230 kb on + strand, within Psest_0352 at 376.230 kb on + strand, within Psest_0352 at 376.231 kb on - strand, within Psest_0352 at 376.231 kb on - strand, within Psest_0352 at 376.231 kb on - strand, within Psest_0352 at 376.287 kb on + strand, within Psest_0352 at 376.287 kb on + strand, within Psest_0352 at 376.287 kb on + strand, within Psest_0352 at 376.287 kb on + strand, within Psest_0352 at 376.287 kb on + strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.288 kb on - strand, within Psest_0352 at 376.335 kb on + strand, within Psest_0352 at 376.335 kb on + strand, within Psest_0352 at 376.335 kb on + strand, within Psest_0352 at 376.335 kb on + strand, within Psest_0352 at 376.335 kb on + strand, within Psest_0352 at 376.336 kb on - strand, within Psest_0352 at 376.419 kb on + strand, within Psest_0352 at 376.419 kb on + strand, within Psest_0352 at 376.420 kb on - strand, within Psest_0352 at 376.425 kb on + strand, within Psest_0352
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 372,587 + +0.1 372,587 + +0.1 372,588 - +0.1 372,595 + -0.9 372,596 - +0.3 372,596 - +0.7 372,596 - -1.2 372,618 + +0.3 372,618 + +0.1 372,618 + +0.7 372,618 + +0.5 372,618 + +0.7 372,618 + +0.4 372,618 + -0.4 372,760 - -0.9 372,760 - -1.4 372,760 - -0.4 372,959 + Psest_0349 0.23 +0.2 372,973 + Psest_0349 0.25 +2.7 372,973 + Psest_0349 0.25 -0.4 372,973 + Psest_0349 0.25 -0.1 372,974 - Psest_0349 0.25 -0.3 373,023 + Psest_0349 0.32 -0.1 373,023 + Psest_0349 0.32 -0.3 373,023 + Psest_0349 0.32 +0.8 373,024 - Psest_0349 0.32 -0.9 373,024 - Psest_0349 0.32 -0.1 373,024 - Psest_0349 0.32 +0.9 373,024 - Psest_0349 0.32 -0.3 373,024 - Psest_0349 0.32 -1.0 373,289 - Psest_0349 0.70 -0.3 373,384 - Psest_0349 0.83 -0.1 373,496 + -0.3 373,496 + +0.0 373,496 + -0.2 373,496 + -0.8 373,496 + -0.8 373,496 + -1.4 373,496 + -0.1 373,496 + -1.8 373,496 + -0.1 373,496 + -1.0 373,497 - -0.4 373,497 - -0.6 373,497 - +0.5 373,497 - -0.6 373,497 - +1.0 373,497 - -0.0 373,497 - -0.0 373,497 - -1.7 373,497 - +0.1 373,502 + -1.0 373,502 + +0.7 373,502 + -0.2 373,502 + -0.1 373,502 + -0.2 373,502 + -0.6 373,502 + -0.7 373,502 + -0.3 373,502 + -0.4 373,502 + -1.8 373,502 + -1.3 373,677 + +0.2 373,677 + +0.7 373,677 + -0.4 374,025 + Psest_0350 0.27 -0.9 374,025 + Psest_0350 0.27 +1.9 374,025 + Psest_0350 0.27 -0.8 374,025 + Psest_0350 0.27 -0.0 374,025 + Psest_0350 0.27 -0.5 374,025 + Psest_0350 0.27 -0.2 374,026 - Psest_0350 0.27 -0.8 374,026 - Psest_0350 0.27 +0.1 374,026 - Psest_0350 0.27 -2.8 374,026 - Psest_0350 0.27 +0.1 374,026 - Psest_0350 0.27 -1.1 374,026 - Psest_0350 0.27 -0.4 374,026 - Psest_0350 0.27 -0.3 374,026 - Psest_0350 0.27 -0.2 374,274 + Psest_0350 0.40 -0.3 374,275 - Psest_0350 0.40 -0.3 374,673 + Psest_0350 0.61 -0.9 374,673 + Psest_0350 0.61 -0.6 374,673 + Psest_0350 0.61 -1.3 374,673 + Psest_0350 0.61 -1.5 374,673 + Psest_0350 0.61 -0.5 374,673 + Psest_0350 0.61 -0.5 374,674 - Psest_0350 0.61 +0.3 374,674 - Psest_0350 0.61 -2.0 374,674 - Psest_0350 0.61 -2.4 374,674 - Psest_0350 0.61 -0.7 375,225 + Psest_0350 0.89 +0.7 375,225 + Psest_0350 0.89 -0.2 375,225 + Psest_0350 0.89 -1.2 375,225 + Psest_0350 0.89 +0.1 375,225 + Psest_0350 0.89 +0.3 375,225 + Psest_0350 0.89 -0.9 375,225 + Psest_0350 0.89 -1.2 375,225 + Psest_0350 0.89 -0.5 375,225 + Psest_0350 0.89 +0.1 375,225 + Psest_0350 0.89 -0.6 375,225 + Psest_0350 0.89 -0.9 375,226 - Psest_0350 0.89 +1.1 375,226 - Psest_0350 0.89 -0.2 375,226 - Psest_0350 0.89 +0.7 375,226 - Psest_0350 0.89 -0.5 375,279 + +0.7 375,279 + -0.8 375,279 + -0.1 375,279 + -0.2 375,279 + -1.5 375,279 + -0.1 375,280 - +0.9 375,280 - -0.4 375,280 - +0.6 375,348 + +0.7 375,348 + +1.4 375,348 + -1.3 375,349 - -0.2 375,349 - +0.1 375,349 - -0.2 375,349 - -0.9 375,349 - +0.4 375,379 + -0.8 375,380 - -0.6 375,389 + -1.9 375,389 + -0.3 375,492 + -1.3 375,492 + +0.3 375,492 + -0.4 375,493 - -0.5 375,560 - +1.1 375,562 + -0.6 375,562 + +0.1 375,562 + -0.9 375,562 + -0.1 375,562 + -0.5 375,562 + +0.7 375,563 - +0.3 375,563 - +0.3 375,563 - +1.0 375,563 - -0.2 375,571 - -1.1 375,598 + +1.2 375,598 + +0.4 375,670 + Psest_0351 0.14 +0.1 375,671 - Psest_0351 0.14 +0.2 375,708 + Psest_0351 0.23 +0.5 375,775 + Psest_0351 0.40 -1.0 375,775 + Psest_0351 0.40 -0.3 375,817 + Psest_0351 0.50 -0.3 375,817 + Psest_0351 0.50 +2.0 375,817 + Psest_0351 0.50 -0.4 375,817 + Psest_0351 0.50 -0.9 375,818 - Psest_0351 0.50 -1.1 375,818 - Psest_0351 0.50 -0.3 375,818 - Psest_0351 0.50 -1.2 375,818 - Psest_0351 0.50 -0.0 375,818 - Psest_0351 0.50 -1.6 375,818 - Psest_0351 0.50 -0.5 375,818 - Psest_0351 0.50 -0.1 375,818 - Psest_0351 0.50 +0.7 375,818 - Psest_0351 0.50 -2.3 375,818 - Psest_0351 0.50 +0.4 376,038 - -1.0 376,074 + +0.2 376,074 + -0.3 376,075 - -0.8 376,075 - +0.0 376,075 - -0.0 376,075 - -2.5 376,194 + Psest_0352 0.14 -0.8 376,194 + Psest_0352 0.14 +0.9 376,194 + Psest_0352 0.14 -0.2 376,194 + Psest_0352 0.14 +0.2 376,195 - Psest_0352 0.14 +0.4 376,195 - Psest_0352 0.14 +0.9 376,195 - Psest_0352 0.14 -1.3 376,230 + Psest_0352 0.17 -0.5 376,230 + Psest_0352 0.17 -0.3 376,231 - Psest_0352 0.17 -1.1 376,231 - Psest_0352 0.17 +0.7 376,231 - Psest_0352 0.17 -0.1 376,287 + Psest_0352 0.22 +0.1 376,287 + Psest_0352 0.22 -0.4 376,287 + Psest_0352 0.22 -1.0 376,287 + Psest_0352 0.22 -0.5 376,287 + Psest_0352 0.22 +0.6 376,288 - Psest_0352 0.22 -1.8 376,288 - Psest_0352 0.22 -1.5 376,288 - Psest_0352 0.22 -0.4 376,288 - Psest_0352 0.22 +0.7 376,288 - Psest_0352 0.22 -0.4 376,288 - Psest_0352 0.22 +2.3 376,288 - Psest_0352 0.22 +0.6 376,288 - Psest_0352 0.22 -0.1 376,288 - Psest_0352 0.22 +0.5 376,288 - Psest_0352 0.22 +0.1 376,288 - Psest_0352 0.22 -0.5 376,335 + Psest_0352 0.26 +0.9 376,335 + Psest_0352 0.26 +0.8 376,335 + Psest_0352 0.26 +0.3 376,335 + Psest_0352 0.26 -1.2 376,335 + Psest_0352 0.26 -1.0 376,336 - Psest_0352 0.26 -1.0 376,419 + Psest_0352 0.33 +0.5 376,419 + Psest_0352 0.33 -0.9 376,420 - Psest_0352 0.33 -0.2 376,425 + Psest_0352 0.34 +0.1
Or see this region's nucleotide sequence