Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2400

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2398 and Psest_2399 overlap by 4 nucleotidesPsest_2399 and Psest_2400 are separated by 2 nucleotidesPsest_2400 and Psest_2401 overlap by 4 nucleotidesPsest_2401 and Psest_2402 overlap by 14 nucleotides Psest_2398: Psest_2398 - SnoaL-like polyketide cyclase., at 2,551,405 to 2,551,833 _2398 Psest_2399: Psest_2399 - Short-chain dehydrogenases of various substrate specificities, at 2,551,830 to 2,552,597 _2399 Psest_2400: Psest_2400 - Predicted NAD/FAD-binding protein, at 2,552,600 to 2,553,847 _2400 Psest_2401: Psest_2401 - Uncharacterized conserved protein, at 2,553,844 to 2,554,659 _2401 Psest_2402: Psest_2402 - Cyclopropane fatty acid synthase and related methyltransferases, at 2,554,646 to 2,555,935 _2402 Position (kb) 2552 2553 2554Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2551.630 kb on + strand, within Psest_2398at 2551.630 kb on + strand, within Psest_2398at 2551.750 kb on + strand, within Psest_2398at 2551.751 kb on - strand, within Psest_2398at 2551.774 kb on + strand, within Psest_2398at 2551.775 kb on - strand, within Psest_2398at 2552.100 kb on + strand, within Psest_2399at 2552.100 kb on + strand, within Psest_2399at 2552.100 kb on + strand, within Psest_2399at 2552.100 kb on + strand, within Psest_2399at 2552.100 kb on + strand, within Psest_2399at 2552.100 kb on + strand, within Psest_2399at 2552.101 kb on - strand, within Psest_2399at 2552.144 kb on + strand, within Psest_2399at 2552.212 kb on + strand, within Psest_2399at 2552.212 kb on + strand, within Psest_2399at 2552.213 kb on - strand, within Psest_2399at 2552.213 kb on - strand, within Psest_2399at 2552.233 kb on + strand, within Psest_2399at 2552.234 kb on - strand, within Psest_2399at 2552.277 kb on + strand, within Psest_2399at 2552.277 kb on + strand, within Psest_2399at 2552.278 kb on - strand, within Psest_2399at 2552.353 kb on + strand, within Psest_2399at 2552.353 kb on + strand, within Psest_2399at 2552.353 kb on + strand, within Psest_2399at 2552.354 kb on - strand, within Psest_2399at 2552.354 kb on - strand, within Psest_2399at 2552.354 kb on - strand, within Psest_2399at 2552.354 kb on - strand, within Psest_2399at 2552.831 kb on + strand, within Psest_2400at 2552.832 kb on - strand, within Psest_2400at 2552.885 kb on + strand, within Psest_2400at 2552.886 kb on - strand, within Psest_2400at 2552.886 kb on - strand, within Psest_2400at 2552.886 kb on - strand, within Psest_2400at 2552.999 kb on + strand, within Psest_2400at 2553.041 kb on + strand, within Psest_2400at 2553.041 kb on + strand, within Psest_2400at 2553.041 kb on + strand, within Psest_2400at 2553.042 kb on - strand, within Psest_2400at 2553.042 kb on - strand, within Psest_2400at 2553.060 kb on - strand, within Psest_2400at 2553.083 kb on + strand, within Psest_2400at 2553.083 kb on + strand, within Psest_2400at 2553.083 kb on + strand, within Psest_2400at 2553.083 kb on + strand, within Psest_2400at 2553.083 kb on + strand, within Psest_2400at 2553.083 kb on + strand, within Psest_2400at 2553.084 kb on - strand, within Psest_2400at 2553.084 kb on - strand, within Psest_2400at 2553.084 kb on - strand, within Psest_2400at 2553.084 kb on - strand, within Psest_2400at 2553.084 kb on - strand, within Psest_2400at 2553.084 kb on - strand, within Psest_2400at 2553.219 kb on + strand, within Psest_2400at 2553.219 kb on + strand, within Psest_2400at 2553.219 kb on + strand, within Psest_2400at 2553.219 kb on + strand, within Psest_2400at 2553.219 kb on + strand, within Psest_2400at 2553.240 kb on - strand, within Psest_2400at 2553.240 kb on - strand, within Psest_2400at 2553.530 kb on + strand, within Psest_2400at 2553.531 kb on - strand, within Psest_2400at 2553.572 kb on + strand, within Psest_2400at 2553.572 kb on + strand, within Psest_2400at 2553.572 kb on + strand, within Psest_2400at 2553.572 kb on + strand, within Psest_2400at 2553.572 kb on + strand, within Psest_2400at 2553.573 kb on - strand, within Psest_2400at 2553.573 kb on - strand, within Psest_2400at 2553.573 kb on - strand, within Psest_2400at 2553.573 kb on - strand, within Psest_2400at 2553.677 kb on + strand, within Psest_2400at 2553.677 kb on + strand, within Psest_2400at 2553.677 kb on + strand, within Psest_2400at 2553.677 kb on + strand, within Psest_2400at 2553.678 kb on - strand, within Psest_2400at 2553.678 kb on - strand, within Psest_2400at 2553.693 kb on - strand, within Psest_2400at 2553.755 kb on + strandat 2553.755 kb on + strandat 2553.755 kb on + strandat 2553.755 kb on + strandat 2553.755 kb on + strandat 2553.755 kb on + strandat 2553.756 kb on - strandat 2553.756 kb on - strandat 2553.756 kb on - strandat 2553.756 kb on - strandat 2553.946 kb on + strand, within Psest_2401at 2553.947 kb on - strand, within Psest_2401at 2553.975 kb on - strand, within Psest_2401at 2553.975 kb on - strand, within Psest_2401at 2554.192 kb on + strand, within Psest_2401at 2554.271 kb on - strand, within Psest_2401at 2554.271 kb on - strand, within Psest_2401at 2554.540 kb on + strand, within Psest_2401at 2554.541 kb on - strand, within Psest_2401at 2554.657 kb on + strandat 2554.658 kb on - strandat 2554.725 kb on + strandat 2554.726 kb on - strandat 2554.726 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,551,630 + Psest_2398 0.52 -1.7
2,551,630 + Psest_2398 0.52 -1.2
2,551,750 + Psest_2398 0.80 -0.6
2,551,751 - Psest_2398 0.81 +0.0
2,551,774 + Psest_2398 0.86 -0.6
2,551,775 - Psest_2398 0.86 -0.5
2,552,100 + Psest_2399 0.35 -2.0
2,552,100 + Psest_2399 0.35 +0.4
2,552,100 + Psest_2399 0.35 +0.8
2,552,100 + Psest_2399 0.35 -0.2
2,552,100 + Psest_2399 0.35 +0.2
2,552,100 + Psest_2399 0.35 -0.0
2,552,101 - Psest_2399 0.35 -0.8
2,552,144 + Psest_2399 0.41 +0.4
2,552,212 + Psest_2399 0.50 +0.5
2,552,212 + Psest_2399 0.50 +0.2
2,552,213 - Psest_2399 0.50 -2.3
2,552,213 - Psest_2399 0.50 -0.2
2,552,233 + Psest_2399 0.52 -0.0
2,552,234 - Psest_2399 0.53 +0.7
2,552,277 + Psest_2399 0.58 -0.4
2,552,277 + Psest_2399 0.58 +0.1
2,552,278 - Psest_2399 0.58 -0.2
2,552,353 + Psest_2399 0.68 -0.5
2,552,353 + Psest_2399 0.68 +0.3
2,552,353 + Psest_2399 0.68 -1.2
2,552,354 - Psest_2399 0.68 +1.0
2,552,354 - Psest_2399 0.68 -1.9
2,552,354 - Psest_2399 0.68 +0.9
2,552,354 - Psest_2399 0.68 -1.0
2,552,831 + Psest_2400 0.19 -0.7
2,552,832 - Psest_2400 0.19 -1.6
2,552,885 + Psest_2400 0.23 +0.1
2,552,886 - Psest_2400 0.23 +0.4
2,552,886 - Psest_2400 0.23 -0.6
2,552,886 - Psest_2400 0.23 +0.0
2,552,999 + Psest_2400 0.32 +0.1
2,553,041 + Psest_2400 0.35 -0.4
2,553,041 + Psest_2400 0.35 +0.4
2,553,041 + Psest_2400 0.35 +0.2
2,553,042 - Psest_2400 0.35 -0.9
2,553,042 - Psest_2400 0.35 -2.5
2,553,060 - Psest_2400 0.37 -0.6
2,553,083 + Psest_2400 0.39 +0.2
2,553,083 + Psest_2400 0.39 -0.8
2,553,083 + Psest_2400 0.39 -0.2
2,553,083 + Psest_2400 0.39 +0.3
2,553,083 + Psest_2400 0.39 -1.2
2,553,083 + Psest_2400 0.39 -0.2
2,553,084 - Psest_2400 0.39 -0.2
2,553,084 - Psest_2400 0.39 +3.0
2,553,084 - Psest_2400 0.39 -2.0
2,553,084 - Psest_2400 0.39 +1.4
2,553,084 - Psest_2400 0.39 +1.4
2,553,084 - Psest_2400 0.39 -0.9
2,553,219 + Psest_2400 0.50 +0.4
2,553,219 + Psest_2400 0.50 -1.4
2,553,219 + Psest_2400 0.50 +0.9
2,553,219 + Psest_2400 0.50 -0.6
2,553,219 + Psest_2400 0.50 -1.0
2,553,240 - Psest_2400 0.51 -0.2
2,553,240 - Psest_2400 0.51 -1.6
2,553,530 + Psest_2400 0.75 -0.0
2,553,531 - Psest_2400 0.75 +0.7
2,553,572 + Psest_2400 0.78 -1.2
2,553,572 + Psest_2400 0.78 -0.8
2,553,572 + Psest_2400 0.78 -1.0
2,553,572 + Psest_2400 0.78 +0.4
2,553,572 + Psest_2400 0.78 -1.6
2,553,573 - Psest_2400 0.78 -1.6
2,553,573 - Psest_2400 0.78 -0.5
2,553,573 - Psest_2400 0.78 +1.4
2,553,573 - Psest_2400 0.78 -1.4
2,553,677 + Psest_2400 0.86 -0.3
2,553,677 + Psest_2400 0.86 -0.1
2,553,677 + Psest_2400 0.86 +0.7
2,553,677 + Psest_2400 0.86 +0.2
2,553,678 - Psest_2400 0.86 -0.2
2,553,678 - Psest_2400 0.86 -1.9
2,553,693 - Psest_2400 0.88 +0.2
2,553,755 + -0.9
2,553,755 + +0.4
2,553,755 + -0.8
2,553,755 + -1.2
2,553,755 + -0.2
2,553,755 + +0.9
2,553,756 - -0.2
2,553,756 - +0.4
2,553,756 - -0.6
2,553,756 - +0.4
2,553,946 + Psest_2401 0.12 +1.0
2,553,947 - Psest_2401 0.13 -0.2
2,553,975 - Psest_2401 0.16 +1.4
2,553,975 - Psest_2401 0.16 +0.2
2,554,192 + Psest_2401 0.43 -0.4
2,554,271 - Psest_2401 0.52 +0.2
2,554,271 - Psest_2401 0.52 -0.9
2,554,540 + Psest_2401 0.85 +0.3
2,554,541 - Psest_2401 0.85 -0.6
2,554,657 + +0.8
2,554,658 - -0.3
2,554,725 + -2.4
2,554,726 - -0.6
2,554,726 - -1.3

Or see this region's nucleotide sequence