Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2169 and Psest_2170 overlap by 4 nucleotides Psest_2170 and Psest_2171 overlap by 4 nucleotides
Psest_2169: Psest_2169 - malto-oligosyltrehalose synthase, at 2,322,173 to 2,324,959
_2169
Psest_2170: Psest_2170 - 4-alpha-glucanotransferase, at 2,324,956 to 2,327,031
_2170
Psest_2171: Psest_2171 - malto-oligosyltrehalose trehalohydrolase, at 2,327,028 to 2,328,803
_2171
Position (kb)
2324
2325
2326
2327
2328 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2324.187 kb on + strand, within Psest_2169 at 2324.247 kb on + strand, within Psest_2169 at 2324.248 kb on - strand, within Psest_2169 at 2324.248 kb on - strand, within Psest_2169 at 2324.248 kb on - strand, within Psest_2169 at 2324.248 kb on - strand, within Psest_2169 at 2324.248 kb on - strand, within Psest_2169 at 2324.248 kb on - strand, within Psest_2169 at 2324.388 kb on - strand, within Psest_2169 at 2324.388 kb on - strand, within Psest_2169 at 2324.457 kb on + strand, within Psest_2169 at 2324.469 kb on + strand, within Psest_2169 at 2324.469 kb on + strand, within Psest_2169 at 2324.470 kb on - strand, within Psest_2169 at 2324.850 kb on + strand at 2324.850 kb on + strand at 2324.850 kb on + strand at 2324.850 kb on + strand at 2324.850 kb on + strand at 2324.850 kb on + strand at 2324.851 kb on - strand at 2324.851 kb on - strand at 2324.851 kb on - strand at 2324.854 kb on + strand at 2324.854 kb on + strand at 2324.880 kb on + strand at 2324.880 kb on + strand at 2325.239 kb on + strand, within Psest_2170 at 2325.239 kb on + strand, within Psest_2170 at 2325.240 kb on - strand, within Psest_2170 at 2325.615 kb on - strand, within Psest_2170 at 2325.615 kb on - strand, within Psest_2170 at 2325.732 kb on - strand, within Psest_2170 at 2325.995 kb on + strand, within Psest_2170 at 2325.995 kb on + strand, within Psest_2170 at 2326.234 kb on + strand, within Psest_2170 at 2326.235 kb on - strand, within Psest_2170 at 2326.562 kb on + strand, within Psest_2170 at 2326.562 kb on + strand, within Psest_2170 at 2326.562 kb on + strand, within Psest_2170 at 2326.562 kb on + strand, within Psest_2170 at 2326.712 kb on + strand, within Psest_2170 at 2326.781 kb on + strand, within Psest_2170 at 2326.782 kb on - strand, within Psest_2170 at 2326.922 kb on - strand at 2327.048 kb on - strand at 2327.060 kb on + strand at 2327.301 kb on + strand, within Psest_2171 at 2327.752 kb on + strand, within Psest_2171 at 2327.752 kb on + strand, within Psest_2171 at 2327.752 kb on + strand, within Psest_2171 at 2327.819 kb on - strand, within Psest_2171 at 2327.819 kb on - strand, within Psest_2171
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,324,187 + Psest_2169 0.72 -1.0 2,324,247 + Psest_2169 0.74 +0.8 2,324,248 - Psest_2169 0.74 +0.7 2,324,248 - Psest_2169 0.74 -0.7 2,324,248 - Psest_2169 0.74 +0.3 2,324,248 - Psest_2169 0.74 -0.6 2,324,248 - Psest_2169 0.74 -0.7 2,324,248 - Psest_2169 0.74 +0.3 2,324,388 - Psest_2169 0.79 +0.8 2,324,388 - Psest_2169 0.79 -1.1 2,324,457 + Psest_2169 0.82 +2.0 2,324,469 + Psest_2169 0.82 -0.9 2,324,469 + Psest_2169 0.82 -0.2 2,324,470 - Psest_2169 0.82 +0.5 2,324,850 + +2.4 2,324,850 + -0.0 2,324,850 + +0.0 2,324,850 + -0.6 2,324,850 + +1.4 2,324,850 + -1.0 2,324,851 - +0.2 2,324,851 - -0.6 2,324,851 - -0.6 2,324,854 + -1.9 2,324,854 + -1.2 2,324,880 + +0.7 2,324,880 + -0.2 2,325,239 + Psest_2170 0.14 +0.3 2,325,239 + Psest_2170 0.14 +0.7 2,325,240 - Psest_2170 0.14 -0.6 2,325,615 - Psest_2170 0.32 +0.6 2,325,615 - Psest_2170 0.32 -2.2 2,325,732 - Psest_2170 0.37 +0.2 2,325,995 + Psest_2170 0.50 -1.1 2,325,995 + Psest_2170 0.50 -0.6 2,326,234 + Psest_2170 0.62 -1.2 2,326,235 - Psest_2170 0.62 -0.2 2,326,562 + Psest_2170 0.77 -0.4 2,326,562 + Psest_2170 0.77 -0.2 2,326,562 + Psest_2170 0.77 -0.6 2,326,562 + Psest_2170 0.77 +0.2 2,326,712 + Psest_2170 0.85 -0.2 2,326,781 + Psest_2170 0.88 -1.2 2,326,782 - Psest_2170 0.88 -0.4 2,326,922 - +0.7 2,327,048 - -1.4 2,327,060 + +1.4 2,327,301 + Psest_2171 0.15 -1.0 2,327,752 + Psest_2171 0.41 +0.6 2,327,752 + Psest_2171 0.41 -0.4 2,327,752 + Psest_2171 0.41 -0.7 2,327,819 - Psest_2171 0.45 -0.8 2,327,819 - Psest_2171 0.45 -0.6
Or see this region's nucleotide sequence