Strain Fitness in Shewanella amazonensis SB2B around Sama_3450

Experiment: A22 0.0109375 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.0109375 mg/ml
4,079,942	+				-1.4
4,079,942	+				-0.6
4,079,942	+				+0.2
4,079,942	+				+0.1
4,079,943	-				+1.6
4,080,123	-		Sama_3449	0.24	-2.0
4,080,203	+		Sama_3449	0.32	-0.1
4,080,203	+		Sama_3449	0.32	-1.2
4,080,203	+		Sama_3449	0.32	+0.3
4,080,203	+		Sama_3449	0.32	-0.8
4,080,203	+		Sama_3449	0.32	-0.3
4,080,203	+		Sama_3449	0.32	+1.2
4,080,203	+		Sama_3449	0.32	+0.5
4,080,204	-		Sama_3449	0.32	+1.8
4,080,204	-		Sama_3449	0.32	-0.1
4,080,204	-		Sama_3449	0.32	-0.1
4,080,204	-		Sama_3449	0.32	-0.4
4,080,204	-		Sama_3449	0.32	-0.7
4,080,204	-		Sama_3449	0.32	+0.6
4,080,204	-		Sama_3449	0.32	+0.2
4,080,215	-		Sama_3449	0.33	-0.3
4,080,215	-		Sama_3449	0.33	-1.0
4,080,283	+		Sama_3449	0.40	-0.4
4,080,284	-		Sama_3449	0.40	-1.8
4,080,341	+		Sama_3449	0.46	-0.4
4,080,378	+		Sama_3449	0.50	+0.8
4,080,379	-		Sama_3449	0.50	-0.5
4,080,418	+		Sama_3449	0.54	+0.2
4,080,418	+		Sama_3449	0.54	-0.7
4,080,418	+		Sama_3449	0.54	-0.2
4,080,418	+		Sama_3449	0.54	+2.2
4,080,418	+		Sama_3449	0.54	+0.4
4,080,444	-		Sama_3449	0.57	-0.4
4,080,444	-		Sama_3449	0.57	-1.2
4,080,444	-		Sama_3449	0.57	-0.5
4,080,444	-		Sama_3449	0.57	-0.2
4,080,464	+		Sama_3449	0.59	+0.2
4,080,464	+		Sama_3449	0.59	-1.2
4,080,503	-		Sama_3449	0.63	+0.7
4,080,527	+		Sama_3449	0.65	-1.2
4,080,527	+		Sama_3449	0.65	+0.5
4,080,527	+		Sama_3449	0.65	-0.9
4,080,527	+		Sama_3449	0.65	-1.1
4,080,527	+		Sama_3449	0.65	-0.8
4,080,528	-		Sama_3449	0.65	-0.4
4,080,528	-		Sama_3449	0.65	-0.1
4,080,528	-		Sama_3449	0.65	-0.1
4,080,528	-		Sama_3449	0.65	+0.3
4,080,528	-		Sama_3449	0.65	-1.1
4,080,528	-		Sama_3449	0.65	+0.1
4,080,528	-		Sama_3449	0.65	+0.1
4,080,528	-		Sama_3449	0.65	+0.5
4,080,540	+		Sama_3449	0.67	+0.2
4,080,563	-		Sama_3449	0.69	-1.0
4,080,565	+		Sama_3449	0.69	-0.2
4,080,565	+		Sama_3449	0.69	-0.8
4,080,565	+		Sama_3449	0.69	+1.2
4,080,565	+		Sama_3449	0.69	+0.1
4,080,565	+		Sama_3449	0.69	-0.5
4,080,565	+		Sama_3449	0.69	-0.3
4,080,566	-		Sama_3449	0.69	+0.6
4,080,566	-		Sama_3449	0.69	+0.3
4,080,566	-		Sama_3449	0.69	+3.2
4,080,566	-		Sama_3449	0.69	-0.2
4,080,596	+		Sama_3449	0.72	-1.7
4,080,596	+		Sama_3449	0.72	-0.3
4,080,596	+		Sama_3449	0.72	+0.6
4,080,596	+		Sama_3449	0.72	-0.4
4,080,596	+		Sama_3449	0.72	+1.6
4,080,596	+		Sama_3449	0.72	+0.6
4,080,596	+		Sama_3449	0.72	-0.4
4,080,596	+		Sama_3449	0.72	-2.1
4,080,597	-		Sama_3449	0.72	-0.4
4,080,597	-		Sama_3449	0.72	-0.7
4,080,597	-		Sama_3449	0.72	-0.3
4,080,597	-		Sama_3449	0.72	+0.4
4,080,597	-		Sama_3449	0.72	-0.8
4,080,597	-		Sama_3449	0.72	-0.9
4,080,597	-		Sama_3449	0.72	-0.5
4,080,597	-		Sama_3449	0.72	-0.8
4,080,700	+		Sama_3449	0.83	+0.0
4,080,700	+		Sama_3449	0.83	-0.5
4,080,701	-		Sama_3449	0.83	-1.1
4,080,701	-		Sama_3449	0.83	-0.0
4,080,735	+		Sama_3449	0.86	+1.6
4,080,736	-		Sama_3449	0.87	-0.2
4,080,736	-		Sama_3449	0.87	+2.2
4,080,748	+		Sama_3449	0.88	-0.9
4,080,748	+		Sama_3449	0.88	+0.3
4,080,748	+		Sama_3449	0.88	-0.7
4,080,749	-		Sama_3449	0.88	+0.4
4,080,749	-		Sama_3449	0.88	+0.7
4,080,749	-		Sama_3449	0.88	+0.9
4,080,749	-		Sama_3449	0.88	-1.5
4,080,749	-		Sama_3449	0.88	-0.1
4,080,749	-		Sama_3449	0.88	-0.1
4,080,749	-		Sama_3449	0.88	-1.9
4,080,749	-		Sama_3449	0.88	-0.9
4,080,749	-		Sama_3449	0.88	-0.4
4,080,800	+				+0.3
4,080,811	-				-0.2
4,080,811	-				-0.1
4,080,811	-				+0.9
4,080,828	+				-0.3
4,080,829	-				-0.1
4,080,865	+				-0.1
4,080,871	+				-0.0
4,080,871	+				-0.1
4,080,872	-				+1.2
4,080,884	+				+1.2
4,080,884	+				-1.4
4,080,884	+				-1.1
4,080,884	+				+1.0
4,080,885	-				-1.0
4,080,898	+				+1.8
4,080,898	+				+0.1
4,080,899	-				-1.0
4,080,937	-				+0.7
4,080,937	-				+0.0
4,080,943	+				+0.0
4,080,943	+				-0.4
4,080,943	+				+0.1
4,080,943	+				-0.4
4,080,943	+				-0.2
4,080,943	+				-0.4
4,080,944	-				-0.0
4,080,944	-				-1.5
4,080,944	-				-0.5
4,080,944	-				-0.5
4,080,944	-				-1.0
4,080,944	-				-0.9
4,081,056	+		Sama_3450	0.35	+0.6
4,081,056	+		Sama_3450	0.35	-0.3
4,081,057	-		Sama_3450	0.36	-0.6
4,081,057	-		Sama_3450	0.36	+0.0
4,081,061	+		Sama_3450	0.37	-0.8
4,081,061	+		Sama_3450	0.37	-0.3
4,081,088	+		Sama_3450	0.45	-1.1
4,081,088	+		Sama_3450	0.45	-0.4
4,081,088	+		Sama_3450	0.45	-0.8
4,081,088	+		Sama_3450	0.45	-0.4
4,081,089	-		Sama_3450	0.45	-1.4
4,081,170	+		Sama_3450	0.69	+0.1
4,081,170	+		Sama_3450	0.69	-0.2
4,081,280	+				-0.8
4,081,280	+				-1.1
4,081,280	+				-0.3
4,081,280	+				+1.2
4,081,280	+				+0.3
4,081,280	+				-0.2
4,081,280	+				-0.5
4,081,280	+				-0.7
4,081,280	+				-2.3
4,081,280	+				-1.0
4,081,280	+				+0.4
4,081,281	-				+0.6
4,081,281	-				+0.0
4,081,281	-				-0.6
4,081,281	-				+1.0
4,081,281	-				+0.0
4,081,281	-				-1.1
4,081,281	-				+0.2
4,081,281	-				-0.9
4,081,286	+				-1.5
4,081,286	+				-0.6
4,081,286	+				-0.7
4,081,287	-				-0.7
4,081,287	-				+0.2
4,081,287	-				-1.1
4,081,374	+				-0.8
4,081,374	+				-0.8
4,081,375	-				-0.2
4,081,375	-				-0.8
4,081,431	+		Sama_3451	0.10	-0.9
4,081,431	+		Sama_3451	0.10	-0.9
4,081,431	+		Sama_3451	0.10	-2.4
4,081,432	-		Sama_3451	0.10	-1.5
4,081,536	+		Sama_3451	0.17	-0.9
4,081,536	+		Sama_3451	0.17	-1.4
4,081,536	+		Sama_3451	0.17	-2.0
4,081,537	-		Sama_3451	0.17	-0.6
4,081,592	+		Sama_3451	0.21	-1.1
4,081,592	+		Sama_3451	0.21	-0.8
4,081,593	-		Sama_3451	0.21	-0.6
4,081,610	-		Sama_3451	0.23	+0.2
4,081,644	+		Sama_3451	0.25	-1.2
4,081,644	+		Sama_3451	0.25	-1.8
4,081,644	+		Sama_3451	0.25	-1.2
4,081,644	+		Sama_3451	0.25	-0.2
4,081,644	+		Sama_3451	0.25	-0.4
4,081,644	+		Sama_3451	0.25	-0.7
4,081,644	+		Sama_3451	0.25	-1.1
4,081,644	+		Sama_3451	0.25	-0.1
4,081,645	-		Sama_3451	0.25	-1.1
4,081,645	-		Sama_3451	0.25	-0.4
4,081,645	-		Sama_3451	0.25	+0.1
4,081,645	-		Sama_3451	0.25	+0.5
4,081,645	-		Sama_3451	0.25	+1.4
4,081,645	-		Sama_3451	0.25	-1.7
4,081,645	-		Sama_3451	0.25	+0.2
4,081,645	-		Sama_3451	0.25	+2.2
4,081,769	+		Sama_3451	0.34	+1.1
4,081,769	+		Sama_3451	0.34	+0.6
4,081,770	-		Sama_3451	0.34	-0.8
4,081,770	-		Sama_3451	0.34	-0.8
4,081,809	+		Sama_3451	0.36	-0.1
4,081,809	+		Sama_3451	0.36	-0.2
4,081,818	-		Sama_3451	0.37	+1.1
4,081,818	-		Sama_3451	0.37	-1.3
4,081,818	-		Sama_3451	0.37	+0.1
4,081,845	-		Sama_3451	0.39	+0.3
4,081,853	-		Sama_3451	0.40	+1.2
4,081,864	-		Sama_3451	0.40	-1.1
4,081,864	-		Sama_3451	0.40	-0.2
4,081,939	-		Sama_3451	0.46	+0.1
4,081,962	-		Sama_3451	0.47	-0.1
4,081,962	-		Sama_3451	0.47	+0.4
4,082,022	+		Sama_3451	0.51	+0.1
4,082,022	+		Sama_3451	0.51	+2.2
4,082,022	+		Sama_3451	0.51	-0.5
4,082,022	+		Sama_3451	0.51	+0.6
4,082,023	-		Sama_3451	0.51	-0.2
4,082,051	+		Sama_3451	0.53	+0.1
4,082,052	-		Sama_3451	0.54	+0.0
4,082,052	-		Sama_3451	0.54	+0.5
4,082,052	-		Sama_3451	0.54	-0.6
4,082,052	-		Sama_3451	0.54	-0.5
4,082,052	-		Sama_3451	0.54	-0.0
4,082,052	-		Sama_3451	0.54	-1.2
4,082,052	-		Sama_3451	0.54	-1.0
4,082,082	-		Sama_3451	0.56	-0.4
4,082,123	+		Sama_3451	0.58	+0.4
4,082,124	-		Sama_3451	0.59	-0.6
4,082,208	+		Sama_3451	0.64	-1.1
4,082,209	-		Sama_3451	0.64	-0.1
4,082,209	-		Sama_3451	0.64	-0.6
4,082,228	+		Sama_3451	0.66	-0.9
4,082,228	+		Sama_3451	0.66	-0.9
4,082,228	+		Sama_3451	0.66	-0.4
4,082,228	+		Sama_3451	0.66	-0.2
4,082,228	+		Sama_3451	0.66	-0.2
4,082,228	+		Sama_3451	0.66	-0.4
4,082,228	+		Sama_3451	0.66	-1.2
4,082,229	-		Sama_3451	0.66	-1.6
4,082,229	-		Sama_3451	0.66	-1.1
4,082,229	-		Sama_3451	0.66	+0.6
4,082,229	-		Sama_3451	0.66	-0.6
4,082,264	+		Sama_3451	0.68	-0.7
4,082,264	+		Sama_3451	0.68	+0.9
4,082,265	-		Sama_3451	0.68	-0.5
4,082,265	-		Sama_3451	0.68	-0.4