Strain Fitness in Shewanella amazonensis SB2B around Sama_3009

Experiment: A22 0.0109375 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.0109375 mg/ml
3,580,336	+				-0.1
3,580,337	-				-1.0
3,580,337	-				+0.1
3,580,337	-				+0.7
3,580,337	-				-0.8
3,580,337	-				-1.5
3,580,367	+				-1.9
3,580,367	+				-0.6
3,580,367	+				+0.3
3,580,368	-				-0.6
3,580,411	+				-0.6
3,580,411	+				-0.1
3,580,411	+				-0.2
3,580,412	-				+0.9
3,580,412	-				-0.0
3,580,412	-				+0.4
3,580,412	-				-0.1
3,580,412	-				-0.7
3,580,412	-				-0.5
3,580,453	+		Sama_3008	0.13	+0.3
3,580,482	-		Sama_3008	0.16	+0.2
3,580,482	-		Sama_3008	0.16	-1.0
3,580,502	+		Sama_3008	0.19	-1.3
3,580,503	-		Sama_3008	0.19	+0.5
3,580,579	-		Sama_3008	0.28	-0.1
3,580,579	-		Sama_3008	0.28	+0.3
3,580,595	+		Sama_3008	0.30	+0.5
3,580,596	-		Sama_3008	0.30	-0.4
3,580,596	-		Sama_3008	0.30	-0.9
3,580,596	-		Sama_3008	0.30	-0.6
3,580,619	+		Sama_3008	0.33	+1.3
3,580,620	-		Sama_3008	0.33	+0.1
3,580,620	-		Sama_3008	0.33	+0.3
3,580,656	-		Sama_3008	0.38	-1.0
3,580,700	-		Sama_3008	0.43	-1.6
3,580,726	+		Sama_3008	0.47	-1.4
3,580,727	-		Sama_3008	0.47	+0.5
3,580,727	-		Sama_3008	0.47	-1.3
3,580,727	-		Sama_3008	0.47	+1.0
3,580,727	-		Sama_3008	0.47	+0.7
3,580,727	-		Sama_3008	0.47	+1.1
3,580,762	+		Sama_3008	0.51	-0.5
3,580,763	-		Sama_3008	0.51	+1.1
3,580,821	+		Sama_3008	0.59	-0.3
3,580,821	+		Sama_3008	0.59	-0.4
3,580,821	+		Sama_3008	0.59	-0.6
3,580,821	+		Sama_3008	0.59	-2.1
3,580,822	-		Sama_3008	0.59	-1.6
3,580,957	+		Sama_3008	0.76	+0.3
3,580,957	+		Sama_3008	0.76	+0.3
3,580,957	+		Sama_3008	0.76	-0.5
3,580,958	-		Sama_3008	0.76	-0.2
3,580,958	-		Sama_3008	0.76	+0.1
3,581,019	-		Sama_3008	0.83	-0.9
3,581,030	+		Sama_3008	0.85	-2.6
3,581,102	+				-0.4
3,581,104	+				-0.1
3,581,104	+				+0.8
3,581,104	+				+0.3
3,581,104	+				-1.4
3,581,104	+				+0.1
3,581,104	+				-0.9
3,581,105	-				-0.0
3,581,105	-				-1.4
3,581,105	-				+1.5
3,581,105	-				+0.2
3,581,105	-				-0.0
3,581,136	+				-0.3
3,581,137	-				-0.9
3,581,137	-				-2.0
3,581,137	-				-1.5
3,581,137	-				+0.9
3,581,152	+				-1.2
3,581,152	+				-0.9
3,581,152	+				-2.4
3,581,152	+				+1.1
3,581,152	+				-0.9
3,581,152	+				+1.1
3,581,153	-				+0.1
3,581,153	-				+0.4
3,581,153	-				-0.8
3,581,153	-				-0.7
3,581,153	-				+1.0
3,581,153	-				+0.8
3,581,153	-				+0.0
3,581,162	-				+0.1
3,581,162	-				+0.2
3,581,167	+				-0.4
3,581,168	-				-1.7
3,581,223	+				-0.2
3,581,223	+				+1.4
3,581,223	+				-0.7
3,581,244	+				-0.1
3,581,244	+				-1.4
3,581,244	+				+0.3
3,581,245	-				-0.0
3,581,374	+				+0.1
3,581,375	-				-1.6
3,581,375	-				-0.3
3,581,375	-				-1.0
3,581,375	-				-0.1
3,581,386	+				+0.6
3,581,387	-				+0.3
3,581,387	-				+0.6
3,581,506	+	astD	Sama_3009	0.14	-0.8
3,581,512	+	astD	Sama_3009	0.15	-1.2
3,581,512	+	astD	Sama_3009	0.15	+0.9
3,581,513	-	astD	Sama_3009	0.15	-0.7
3,581,513	-	astD	Sama_3009	0.15	+0.7
3,581,523	-	astD	Sama_3009	0.16	-0.2
3,581,523	-	astD	Sama_3009	0.16	+1.1
3,581,599	+	astD	Sama_3009	0.21	-1.6
3,581,599	+	astD	Sama_3009	0.21	-0.5
3,581,600	-	astD	Sama_3009	0.21	+0.1
3,581,629	+	astD	Sama_3009	0.23	+0.5
3,581,629	+	astD	Sama_3009	0.23	-0.2
3,581,630	-	astD	Sama_3009	0.23	-0.2
3,581,630	-	astD	Sama_3009	0.23	-0.2
3,581,652	+	astD	Sama_3009	0.24	-0.7
3,581,653	-	astD	Sama_3009	0.25	-2.1
3,581,653	-	astD	Sama_3009	0.25	-0.4
3,581,653	-	astD	Sama_3009	0.25	-0.2
3,581,653	-	astD	Sama_3009	0.25	+0.0
3,581,750	+	astD	Sama_3009	0.31	-0.1
3,581,750	+	astD	Sama_3009	0.31	+1.3
3,581,751	-	astD	Sama_3009	0.31	+0.2
3,581,804	+	astD	Sama_3009	0.35	-1.0
3,581,805	-	astD	Sama_3009	0.35	-0.2
3,581,835	+	astD	Sama_3009	0.37	+1.9
3,581,835	+	astD	Sama_3009	0.37	-0.1
3,581,836	-	astD	Sama_3009	0.37	-1.3
3,581,836	-	astD	Sama_3009	0.37	-0.3
3,581,905	+	astD	Sama_3009	0.42	+2.1
3,581,905	+	astD	Sama_3009	0.42	+0.5
3,581,906	-	astD	Sama_3009	0.42	+2.9
3,581,906	-	astD	Sama_3009	0.42	-0.4
3,581,906	-	astD	Sama_3009	0.42	-0.2
3,581,906	-	astD	Sama_3009	0.42	+0.1
3,581,924	+	astD	Sama_3009	0.43	+0.5
3,581,924	+	astD	Sama_3009	0.43	-0.2
3,581,925	-	astD	Sama_3009	0.43	+1.5
3,581,925	-	astD	Sama_3009	0.43	-0.7
3,581,925	-	astD	Sama_3009	0.43	-0.4
3,581,945	+	astD	Sama_3009	0.44	+2.1
3,581,946	-	astD	Sama_3009	0.45	-0.6
3,581,946	-	astD	Sama_3009	0.45	-2.6
3,581,946	-	astD	Sama_3009	0.45	-0.0
3,581,946	-	astD	Sama_3009	0.45	+0.6
3,582,017	+	astD	Sama_3009	0.49	+0.7
3,582,061	+	astD	Sama_3009	0.52	-0.0
3,582,061	+	astD	Sama_3009	0.52	+0.6
3,582,061	+	astD	Sama_3009	0.52	-0.5
3,582,062	-	astD	Sama_3009	0.52	-0.9
3,582,177	-	astD	Sama_3009	0.60	-0.7
3,582,207	+	astD	Sama_3009	0.62	-1.0
3,582,208	-	astD	Sama_3009	0.62	-1.0
3,582,208	-	astD	Sama_3009	0.62	-1.3
3,582,208	-	astD	Sama_3009	0.62	-0.7
3,582,261	+	astD	Sama_3009	0.66	-1.9
3,582,261	+	astD	Sama_3009	0.66	-0.7
3,582,261	+	astD	Sama_3009	0.66	+1.9
3,582,262	-	astD	Sama_3009	0.66	+0.6
3,582,262	-	astD	Sama_3009	0.66	-1.4
3,582,262	-	astD	Sama_3009	0.66	+0.1
3,582,262	-	astD	Sama_3009	0.66	-0.5
3,582,262	-	astD	Sama_3009	0.66	-0.6
3,582,262	-	astD	Sama_3009	0.66	-0.7
3,582,266	+	astD	Sama_3009	0.66	+0.2
3,582,266	+	astD	Sama_3009	0.66	-0.1
3,582,266	+	astD	Sama_3009	0.66	-0.9
3,582,266	+	astD	Sama_3009	0.66	+0.4
3,582,267	-	astD	Sama_3009	0.67	-0.2
3,582,267	-	astD	Sama_3009	0.67	+1.1
3,582,267	-	astD	Sama_3009	0.67	-0.9
3,582,267	-	astD	Sama_3009	0.67	+0.1
3,582,267	-	astD	Sama_3009	0.67	+0.1
3,582,267	-	astD	Sama_3009	0.67	-0.1
3,582,291	+	astD	Sama_3009	0.68	-0.2
3,582,291	+	astD	Sama_3009	0.68	-1.0
3,582,291	+	astD	Sama_3009	0.68	-0.9
3,582,291	+	astD	Sama_3009	0.68	-1.0
3,582,291	+	astD	Sama_3009	0.68	+0.9
3,582,291	+	astD	Sama_3009	0.68	-0.4
3,582,291	+	astD	Sama_3009	0.68	+0.4
3,582,292	-	astD	Sama_3009	0.68	-1.2
3,582,292	-	astD	Sama_3009	0.68	-1.5
3,582,292	-	astD	Sama_3009	0.68	+0.3
3,582,292	-	astD	Sama_3009	0.68	-0.3
3,582,292	-	astD	Sama_3009	0.68	+0.3
3,582,292	-	astD	Sama_3009	0.68	-0.2
3,582,292	-	astD	Sama_3009	0.68	+0.9
3,582,292	-	astD	Sama_3009	0.68	-0.6
3,582,325	+	astD	Sama_3009	0.70	-0.7
3,582,359	+	astD	Sama_3009	0.73	-0.1
3,582,421	+	astD	Sama_3009	0.77	-0.3
3,582,421	+	astD	Sama_3009	0.77	-1.9
3,582,508	-	astD	Sama_3009	0.83	-1.5
3,582,593	+	astD	Sama_3009	0.89	-0.8
3,582,593	+	astD	Sama_3009	0.89	+0.1
3,582,594	-	astD	Sama_3009	0.89	-2.4
3,582,594	-	astD	Sama_3009	0.89	+0.1
3,582,639	+				-0.8
3,582,663	-				-0.2
3,582,663	-				-0.9
3,582,743	+				+1.4
3,582,743	+				-1.0
3,582,744	-				+1.1
3,582,744	-				+0.3
3,582,744	-				+0.3
3,582,766	+				-0.4
3,582,766	+				+1.3
3,582,766	+				-0.4
3,582,766	+				-1.2
3,582,766	+				-0.1
3,582,766	+				-0.7
3,582,766	+				-0.8
3,582,766	+				-0.2
3,582,766	+				+1.2
3,582,767	-				+0.4
3,582,767	-				-1.1
3,582,767	-				+0.1
3,582,767	-				+0.9
3,582,767	-				-0.1
3,582,767	-				+0.7
3,582,767	-				+0.1
3,582,768	+				-0.3
3,582,768	+				+0.3
3,582,768	+				+0.9
3,582,769	-				-1.2
3,582,769	-				-1.6
3,582,834	+				-0.1
3,582,834	+				+0.5
3,582,834	+				-0.2
3,582,834	+				-0.3
3,582,886	+		Sama_3010	0.12	+0.6
3,582,886	+		Sama_3010	0.12	+0.4
3,582,914	+		Sama_3010	0.15	-0.4
3,582,914	+		Sama_3010	0.15	-1.4
3,582,915	-		Sama_3010	0.15	+1.3
3,583,026	+		Sama_3010	0.26	-0.2
3,583,026	+		Sama_3010	0.26	-0.0
3,583,026	+		Sama_3010	0.26	+0.8
3,583,026	+		Sama_3010	0.26	-0.7
3,583,026	+		Sama_3010	0.26	+0.5
3,583,027	-		Sama_3010	0.26	-0.4
3,583,027	-		Sama_3010	0.26	-0.5
3,583,036	+		Sama_3010	0.27	-0.0
3,583,036	+		Sama_3010	0.27	-0.1
3,583,037	-		Sama_3010	0.27	+1.1
3,583,039	-		Sama_3010	0.27	-0.2
3,583,094	+		Sama_3010	0.32	+1.7
3,583,094	+		Sama_3010	0.32	+0.2
3,583,094	+		Sama_3010	0.32	+0.5
3,583,094	+		Sama_3010	0.32	+1.2
3,583,095	-		Sama_3010	0.32	-0.3
3,583,095	-		Sama_3010	0.32	+0.5
3,583,095	-		Sama_3010	0.32	+0.1
3,583,095	-		Sama_3010	0.32	-0.9
3,583,095	-		Sama_3010	0.32	-0.4
3,583,144	+		Sama_3010	0.37	+0.6
3,583,144	+		Sama_3010	0.37	+0.4
3,583,144	+		Sama_3010	0.37	+0.2
3,583,144	+		Sama_3010	0.37	+2.1
3,583,144	+		Sama_3010	0.37	+0.7
3,583,144	+		Sama_3010	0.37	+0.3
3,583,144	+		Sama_3010	0.37	-0.9
3,583,144	+		Sama_3010	0.37	+0.7
3,583,144	+		Sama_3010	0.37	-0.3
3,583,144	+		Sama_3010	0.37	-0.5
3,583,144	+		Sama_3010	0.37	-0.1
3,583,144	+		Sama_3010	0.37	+2.8
3,583,144	+		Sama_3010	0.37	-0.4
3,583,144	+		Sama_3010	0.37	+0.8
3,583,145	-		Sama_3010	0.37	-0.8
3,583,145	-		Sama_3010	0.37	+0.5
3,583,145	-		Sama_3010	0.37	+0.8
3,583,145	-		Sama_3010	0.37	+2.3
3,583,145	-		Sama_3010	0.37	+0.4
3,583,145	-		Sama_3010	0.37	+0.6
3,583,145	-		Sama_3010	0.37	-0.7
3,583,145	-		Sama_3010	0.37	+0.6
3,583,145	-		Sama_3010	0.37	-0.9
3,583,145	-		Sama_3010	0.37	-0.9
3,583,145	-		Sama_3010	0.37	+2.1
3,583,145	-		Sama_3010	0.37	-0.5
3,583,145	-		Sama_3010	0.37	+0.3
3,583,145	-		Sama_3010	0.37	+2.1
3,583,145	-		Sama_3010	0.37	+0.7
3,583,145	-		Sama_3010	0.37	+0.4
3,583,146	+		Sama_3010	0.37	-0.8
3,583,146	+		Sama_3010	0.37	-0.2
3,583,146	+		Sama_3010	0.37	+0.8
3,583,146	+		Sama_3010	0.37	+0.1
3,583,147	-		Sama_3010	0.37	+1.2
3,583,204	+		Sama_3010	0.43	+0.3
3,583,204	+		Sama_3010	0.43	-0.6
3,583,205	-		Sama_3010	0.43	-1.2
3,583,205	-		Sama_3010	0.43	-0.2
3,583,205	-		Sama_3010	0.43	+0.5
3,583,255	+		Sama_3010	0.48	-0.7
3,583,256	-		Sama_3010	0.48	-0.6
3,583,390	+		Sama_3010	0.61	-0.0
3,583,435	+		Sama_3010	0.66	-0.0
3,583,435	+		Sama_3010	0.66	-0.2
3,583,495	+		Sama_3010	0.72	+0.4
3,583,495	+		Sama_3010	0.72	+0.8
3,583,495	+		Sama_3010	0.72	+0.3
3,583,496	-		Sama_3010	0.72	+1.1
3,583,496	-		Sama_3010	0.72	-1.1
3,583,496	-		Sama_3010	0.72	+0.1
3,583,496	-		Sama_3010	0.72	-0.2
3,583,496	-		Sama_3010	0.72	+0.2
3,583,496	-		Sama_3010	0.72	-0.2
3,583,497	+		Sama_3010	0.72	+2.7
3,583,497	+		Sama_3010	0.72	-1.4
3,583,497	+		Sama_3010	0.72	-0.2
3,583,498	-		Sama_3010	0.72	-0.5
3,583,498	-		Sama_3010	0.72	+0.9
3,583,498	-		Sama_3010	0.72	+0.5
3,583,498	-		Sama_3010	0.72	-1.2
3,583,498	-		Sama_3010	0.72	-0.5
3,583,498	-		Sama_3010	0.72	-0.2
3,583,516	+		Sama_3010	0.74	+1.1
3,583,522	+		Sama_3010	0.74	+1.1
3,583,522	+		Sama_3010	0.74	+0.0
3,583,522	+		Sama_3010	0.74	+0.5
3,583,523	-		Sama_3010	0.74	+0.8
3,583,523	-		Sama_3010	0.74	-1.1
3,583,523	-		Sama_3010	0.74	-0.2
3,583,523	-		Sama_3010	0.74	+0.0
3,583,523	-		Sama_3010	0.74	+1.1
3,583,523	-		Sama_3010	0.74	+0.4
3,583,523	-		Sama_3010	0.74	-1.1
3,583,609	+		Sama_3010	0.83	-0.7
3,583,610	-		Sama_3010	0.83	+0.1
3,583,621	+		Sama_3010	0.84	-0.9
3,583,622	-		Sama_3010	0.84	+1.8