Strain Fitness in Shewanella amazonensis SB2B around Sama_2980

Experiment: A22 0.0109375 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.0109375 mg/ml
3,548,419	+		Sama_2978	0.69	+0.1
3,548,419	+		Sama_2978	0.69	-1.1
3,548,420	-		Sama_2978	0.69	+0.5
3,548,440	+		Sama_2978	0.72	-0.4
3,548,441	-		Sama_2978	0.72	+1.1
3,548,509	+		Sama_2978	0.83	-0.4
3,548,509	+		Sama_2978	0.83	+0.3
3,548,510	-		Sama_2978	0.83	-1.7
3,548,510	-		Sama_2978	0.83	+0.0
3,548,510	-		Sama_2978	0.83	+0.1
3,548,600	+				+0.5
3,548,600	+				-0.3
3,548,603	+				-0.4
3,548,603	+				+2.1
3,548,603	+				-2.2
3,548,603	+				+0.5
3,548,604	-				-1.4
3,548,604	-				+0.7
3,548,850	-		Sama_2979	0.31	-1.3
3,548,850	-		Sama_2979	0.31	-0.4
3,548,884	+		Sama_2979	0.35	+0.1
3,548,938	+		Sama_2979	0.42	+0.3
3,548,942	+		Sama_2979	0.43	+0.4
3,548,942	+		Sama_2979	0.43	-0.9
3,548,943	-		Sama_2979	0.43	+0.7
3,548,965	+		Sama_2979	0.46	-0.9
3,549,113	-		Sama_2979	0.65	-1.4
3,549,113	-		Sama_2979	0.65	+0.2
3,549,159	+		Sama_2979	0.71	+1.1
3,549,159	+		Sama_2979	0.71	-0.3
3,549,159	+		Sama_2979	0.71	-0.9
3,549,159	+		Sama_2979	0.71	-1.1
3,549,159	+		Sama_2979	0.71	-1.6
3,549,160	-		Sama_2979	0.71	-0.1
3,549,308	+				-0.3
3,549,308	+				-1.7
3,549,308	+				-0.5
3,549,309	-				-0.8
3,549,309	-				+0.1
3,549,371	+				-0.4
3,549,372	-				+0.8
3,549,504	+		Sama_2980	0.11	+0.1
3,549,560	+		Sama_2980	0.16	-1.2
3,549,560	+		Sama_2980	0.16	-0.6
3,549,561	-		Sama_2980	0.16	-0.9
3,549,588	+		Sama_2980	0.18	-0.7
3,549,588	+		Sama_2980	0.18	-0.4
3,549,712	+		Sama_2980	0.28	+0.8
3,549,713	-		Sama_2980	0.28	-0.1
3,549,713	-		Sama_2980	0.28	-0.6
3,549,713	-		Sama_2980	0.28	-1.0
3,549,713	-		Sama_2980	0.28	-0.3
3,549,713	-		Sama_2980	0.28	+0.1
3,549,753	+		Sama_2980	0.32	-1.1
3,549,753	+		Sama_2980	0.32	-1.4
3,549,753	+		Sama_2980	0.32	-1.0
3,549,754	-		Sama_2980	0.32	+1.1
3,549,754	-		Sama_2980	0.32	-0.1
3,549,754	-		Sama_2980	0.32	-0.9
3,549,754	-		Sama_2980	0.32	-0.5
3,549,754	-		Sama_2980	0.32	-1.1
3,549,820	+		Sama_2980	0.37	+0.9
3,549,820	+		Sama_2980	0.37	+0.1
3,549,820	+		Sama_2980	0.37	-0.5
3,549,821	-		Sama_2980	0.37	-0.7
3,549,821	-		Sama_2980	0.37	+0.3
3,549,821	-		Sama_2980	0.37	+0.1
3,549,861	-		Sama_2980	0.40	-1.1
3,549,869	+		Sama_2980	0.41	-1.6
3,549,926	+		Sama_2980	0.46	+0.3
3,549,927	-		Sama_2980	0.46	-0.3
3,549,927	-		Sama_2980	0.46	-0.4
3,549,927	-		Sama_2980	0.46	-0.4
3,549,957	+		Sama_2980	0.48	-0.5
3,549,983	+		Sama_2980	0.50	-1.8
3,549,983	+		Sama_2980	0.50	+0.7
3,549,984	-		Sama_2980	0.51	-0.6
3,549,984	-		Sama_2980	0.51	+0.6
3,549,988	-		Sama_2980	0.51	-0.1
3,549,988	-		Sama_2980	0.51	-0.8
3,549,988	-		Sama_2980	0.51	-0.1
3,550,025	+		Sama_2980	0.54	+1.9
3,550,025	+		Sama_2980	0.54	-0.2
3,550,026	-		Sama_2980	0.54	-0.2
3,550,224	-		Sama_2980	0.70	-0.2
3,550,235	+		Sama_2980	0.71	-1.4
3,550,236	-		Sama_2980	0.71	-0.9
3,550,238	+		Sama_2980	0.71	+1.3
3,550,238	+		Sama_2980	0.71	-1.0
3,550,308	-		Sama_2980	0.77	-0.9
3,550,326	+		Sama_2980	0.79	-0.2
3,550,326	+		Sama_2980	0.79	-0.6
3,550,326	+		Sama_2980	0.79	-1.0
3,550,326	+		Sama_2980	0.79	+1.3
3,550,351	+		Sama_2980	0.81	+0.1
3,550,380	+		Sama_2980	0.83	+0.1
3,550,380	+		Sama_2980	0.83	+1.6
3,550,380	+		Sama_2980	0.83	-1.3
3,550,380	+		Sama_2980	0.83	-0.3
3,550,381	-		Sama_2980	0.83	-1.8
3,550,381	-		Sama_2980	0.83	+2.1
3,550,382	+		Sama_2980	0.83	-0.7
3,550,382	+		Sama_2980	0.83	-1.5
3,550,382	+		Sama_2980	0.83	+0.1
3,550,382	+		Sama_2980	0.83	-2.2
3,550,382	+		Sama_2980	0.83	-1.2
3,550,382	+		Sama_2980	0.83	-0.9
3,550,383	-		Sama_2980	0.83	+0.1
3,550,383	-		Sama_2980	0.83	-0.1
3,550,383	-		Sama_2980	0.83	-0.3
3,550,383	-		Sama_2980	0.83	-0.4
3,550,383	-		Sama_2980	0.83	-0.2
3,550,383	-		Sama_2980	0.83	-0.4
3,550,541	+				-0.0
3,550,541	+				+1.1
3,550,541	+				+0.3
3,550,542	-				-0.5
3,550,542	-				+1.1
3,550,542	-				+0.8
3,550,542	-				+0.1
3,550,542	-				-0.5
3,550,542	-				-0.9
3,550,544	+				-1.7
3,550,544	+				-0.1
3,550,544	+				+2.6
3,550,544	+				-1.0
3,550,544	+				+0.3
3,550,544	+				-0.1
3,550,545	-				+0.9
3,550,545	-				+0.4
3,550,639	+				+0.5
3,550,643	+				+0.5
3,550,643	+				-0.6
3,550,643	+				-1.5
3,550,643	+				+1.3
3,550,728	+		Sama_2981	0.11	-0.2
3,550,729	-		Sama_2981	0.11	+0.3
3,550,760	+		Sama_2981	0.13	+1.5
3,550,764	-		Sama_2981	0.13	-0.5
3,550,764	-		Sama_2981	0.13	-0.4
3,550,843	+		Sama_2981	0.19	+0.3
3,550,844	-		Sama_2981	0.19	+0.3
3,550,844	-		Sama_2981	0.19	-0.7
3,550,878	-		Sama_2981	0.21	-0.5
3,550,878	-		Sama_2981	0.21	-0.6
3,551,004	-		Sama_2981	0.31	-0.6
3,551,043	+		Sama_2981	0.34	+0.1
3,551,044	-		Sama_2981	0.34	-0.1
3,551,117	+		Sama_2981	0.39	-0.2
3,551,117	+		Sama_2981	0.39	-1.4
3,551,117	+		Sama_2981	0.39	-0.9
3,551,117	+		Sama_2981	0.39	-2.2
3,551,118	-		Sama_2981	0.39	+0.3
3,551,118	-		Sama_2981	0.39	+1.2
3,551,118	-		Sama_2981	0.39	-1.1
3,551,206	+		Sama_2981	0.45	-0.9
3,551,211	+		Sama_2981	0.46	+1.1
3,551,211	+		Sama_2981	0.46	+0.1
3,551,211	+		Sama_2981	0.46	-1.6
3,551,211	+		Sama_2981	0.46	+1.2
3,551,211	+		Sama_2981	0.46	-0.5
3,551,211	+		Sama_2981	0.46	+0.0
3,551,211	+		Sama_2981	0.46	+0.5
3,551,211	+		Sama_2981	0.46	+0.0
3,551,211	+		Sama_2981	0.46	+0.4
3,551,211	+		Sama_2981	0.46	+0.5
3,551,211	+		Sama_2981	0.46	-0.4
3,551,211	+		Sama_2981	0.46	-0.6
3,551,212	-		Sama_2981	0.46	-0.5
3,551,212	-		Sama_2981	0.46	-0.3
3,551,212	-		Sama_2981	0.46	-0.3
3,551,212	-		Sama_2981	0.46	-0.5
3,551,212	-		Sama_2981	0.46	+0.9
3,551,212	-		Sama_2981	0.46	-0.6
3,551,212	-		Sama_2981	0.46	-1.4
3,551,212	-		Sama_2981	0.46	-0.2
3,551,212	-		Sama_2981	0.46	-0.1
3,551,212	-		Sama_2981	0.46	-1.6
3,551,212	-		Sama_2981	0.46	-0.3
3,551,212	-		Sama_2981	0.46	+1.3
3,551,348	+		Sama_2981	0.56	-0.6
3,551,390	+		Sama_2981	0.59	-0.8
3,551,390	+		Sama_2981	0.59	+0.4
3,551,390	+		Sama_2981	0.59	-1.1
3,551,391	-		Sama_2981	0.59	+0.5
3,551,391	-		Sama_2981	0.59	-0.5
3,551,391	-		Sama_2981	0.59	+1.1
3,551,391	-		Sama_2981	0.59	-0.1
3,551,391	-		Sama_2981	0.59	+1.2
3,551,391	-		Sama_2981	0.59	+1.2
3,551,435	+		Sama_2981	0.62	+0.3
3,551,435	+		Sama_2981	0.62	+0.1
3,551,435	+		Sama_2981	0.62	-0.2
3,551,435	+		Sama_2981	0.62	-0.2
3,551,436	-		Sama_2981	0.62	+1.1
3,551,436	-		Sama_2981	0.62	-0.5
3,551,438	+		Sama_2981	0.62	+0.8
3,551,438	+		Sama_2981	0.62	-0.1
3,551,439	-		Sama_2981	0.62	-0.8
3,551,439	-		Sama_2981	0.62	+0.7
3,551,480	+		Sama_2981	0.65	-0.6