Strain Fitness in Shewanella amazonensis SB2B around Sama_2162

Experiment: A22 0.0109375 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.0109375 mg/ml
2,610,580	-		Sama_2160	0.75	+0.5
2,610,616	-		Sama_2160	0.78	-0.0
2,610,709	-		Sama_2160	0.88	-0.2
2,610,720	-		Sama_2160	0.89	-1.1
2,610,720	-		Sama_2160	0.89	-0.2
2,610,723	-		Sama_2160	0.90	-1.7
2,610,723	-		Sama_2160	0.90	-2.2
2,610,723	-		Sama_2160	0.90	-0.4
2,610,723	-		Sama_2160	0.90	-0.1
2,610,725	-				+0.8
2,610,725	-				-0.5
2,610,725	-				-0.8
2,610,725	-				+1.3
2,610,766	-				-0.5
2,610,808	+				-1.0
2,610,809	-				+0.7
2,610,809	-				+0.2
2,610,809	-				-1.3
2,610,809	-				+0.9
2,610,809	-				-1.1
2,610,809	-				-0.3
2,610,836	-				+0.2
2,610,853	+				-0.9
2,610,853	+				-1.3
2,610,853	+				-1.7
2,610,910	+				+0.5
2,610,910	+				-1.2
2,610,910	+				-0.5
2,610,911	-				-0.4
2,610,911	-				-2.4
2,610,911	-				+0.1
2,611,052	+		Sama_2161	0.29	-0.7
2,611,087	-		Sama_2161	0.35	+0.6
2,611,124	-		Sama_2161	0.42	-1.4
2,611,135	+		Sama_2161	0.44	-0.2
2,611,135	+		Sama_2161	0.44	-0.3
2,611,135	+		Sama_2161	0.44	+0.1
2,611,158	-		Sama_2161	0.49	-0.4
2,611,158	-		Sama_2161	0.49	+0.8
2,611,158	-		Sama_2161	0.49	-0.2
2,611,229	-		Sama_2161	0.62	-0.1
2,611,525	-				-0.3
2,611,528	+				-0.7
2,611,529	-				-0.6
2,611,529	-				+0.1
2,611,529	-				+1.2
2,611,529	-				+0.1
2,611,564	-				+0.7
2,611,567	-				-0.1
2,611,576	-				-0.4
2,611,624	+		Sama_2162	0.15	-0.1
2,611,624	+		Sama_2162	0.15	+0.7
2,611,625	-		Sama_2162	0.15	-0.8
2,611,625	-		Sama_2162	0.15	-0.1
2,611,625	-		Sama_2162	0.15	+0.2
2,611,625	-		Sama_2162	0.15	-0.5
2,611,626	+		Sama_2162	0.15	-0.7
2,611,626	+		Sama_2162	0.15	-1.1
2,611,627	-		Sama_2162	0.15	-1.9
2,611,683	-		Sama_2162	0.27	+0.3
2,611,730	+		Sama_2162	0.37	-0.7
2,611,730	+		Sama_2162	0.37	-0.9
2,611,731	-		Sama_2162	0.37	+1.7
2,611,869	-		Sama_2162	0.67	-1.3
2,611,869	-		Sama_2162	0.67	-1.3
2,611,921	-		Sama_2162	0.78	-0.7
2,611,921	-		Sama_2162	0.78	+0.2
2,611,962	+		Sama_2162	0.86	+0.7
2,612,018	-				-0.4
2,612,018	-				-2.2
2,612,025	+				-0.9
2,612,025	+				-0.4
2,612,044	-				+0.2
2,612,044	-				+0.5
2,612,066	-				-0.3
2,612,079	-				-0.5
2,612,153	-				+0.4
2,612,158	+				-0.1
2,612,158	+				+0.7
2,612,158	+				+0.3
2,612,158	+				+0.1
2,612,158	+				+0.7
2,612,158	+				+0.4
2,612,159	-				-0.2
2,612,159	-				-0.3
2,612,159	-				+0.3
2,612,159	-				-0.2
2,612,159	-				+0.9
2,612,159	-				-0.2
2,612,159	-				-0.5
2,612,159	-				-1.9
2,612,159	-				+0.8
2,612,159	-				-0.7
2,612,160	+				+0.3
2,612,160	+				-2.7
2,612,160	+				-1.3
2,612,160	+				-0.3
2,612,160	+				-1.1
2,612,160	+				+1.1
2,612,160	+				+0.3
2,612,160	+				+2.3
2,612,160	+				+1.0
2,612,160	+				-1.0
2,612,160	+				+1.7
2,612,160	+				-0.4
2,612,160	+				-0.1
2,612,160	+				-0.2
2,612,160	+				-0.7
2,612,160	+				+1.3
2,612,160	+				+0.1
2,612,160	+				-0.3
2,612,161	-				-1.3
2,612,161	-				-1.7
2,612,161	-				+0.6
2,612,161	-				+1.3
2,612,161	-				-1.0
2,612,161	-				+1.0
2,612,161	-				-0.6
2,612,162	+				+0.8
2,612,162	+				-1.4
2,612,162	+				+0.1
2,612,162	+				-1.1
2,612,163	-				-0.3
2,612,163	-				+0.7
2,612,239	+				+1.1
2,612,246	-				+0.3
2,612,274	-				+0.1
2,612,365	-				-0.3
2,612,429	-				+0.5
2,612,429	-				+0.8
2,612,440	-				-0.9
2,612,502	+		Sama_2163	0.11	+0.4
2,612,618	-		Sama_2163	0.15	+0.1
2,612,618	-		Sama_2163	0.15	-0.1
2,612,626	-		Sama_2163	0.16	-1.2
2,612,631	+		Sama_2163	0.16	-0.1
2,612,632	-		Sama_2163	0.16	+0.3
2,612,649	+		Sama_2163	0.16	+0.1
2,612,649	+		Sama_2163	0.16	-0.4
2,612,649	+		Sama_2163	0.16	+0.7
2,612,650	-		Sama_2163	0.16	+0.2
2,612,653	+		Sama_2163	0.17	-0.9
2,612,653	+		Sama_2163	0.17	-0.7
2,612,721	+		Sama_2163	0.19	+1.3
2,612,722	-		Sama_2163	0.19	+0.4
2,612,722	-		Sama_2163	0.19	-1.2
2,612,770	+		Sama_2163	0.21	-1.3
2,612,771	-		Sama_2163	0.21	+0.3
2,612,782	+		Sama_2163	0.21	-0.0
2,612,782	+		Sama_2163	0.21	+1.1
2,612,782	+		Sama_2163	0.21	-2.0
2,612,782	+		Sama_2163	0.21	-0.4
2,612,783	-		Sama_2163	0.21	-0.1
2,612,783	-		Sama_2163	0.21	+0.1
2,612,783	-		Sama_2163	0.21	-0.7
2,612,857	+		Sama_2163	0.24	-1.1
2,612,857	+		Sama_2163	0.24	+0.7
2,612,857	+		Sama_2163	0.24	+0.3
2,612,857	+		Sama_2163	0.24	+0.7
2,612,858	-		Sama_2163	0.24	-0.5
2,612,858	-		Sama_2163	0.24	-0.9
2,612,934	+		Sama_2163	0.27	-0.3
2,613,006	+		Sama_2163	0.29	-0.1
2,613,006	+		Sama_2163	0.29	-0.3
2,613,006	+		Sama_2163	0.29	-1.7
2,613,007	-		Sama_2163	0.29	+0.7