Strain Fitness in Shewanella amazonensis SB2B around Sama_1552

Experiment: A22 0.0109375 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1550 and Sama_1551 are separated by 3 nucleotidesSama_1551 and nadE are separated by 109 nucleotidesnadE and Sama_1553 are separated by 53 nucleotides Sama_1550: Sama_1550 - threonine efflux protein, putative (RefSeq), at 1,887,305 to 1,887,988 _1550 Sama_1551: Sama_1551 - AraC/XylS family transcriptional regulator (RefSeq), at 1,887,992 to 1,888,819 _1551 Sama_1552: nadE - NAD synthetase (RefSeq), at 1,888,929 to 1,889,759 nadE Sama_1553: Sama_1553 - hypothetical protein (RefSeq), at 1,889,813 to 1,891,294 _1553 Position (kb) 1888 1889 1890Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1887.946 kb on + strandat 1887.947 kb on - strandat 1888.004 kb on - strandat 1888.057 kb on + strandat 1888.058 kb on - strandat 1888.066 kb on + strandat 1888.111 kb on + strand, within Sama_1551at 1888.111 kb on + strand, within Sama_1551at 1888.112 kb on - strand, within Sama_1551at 1888.112 kb on - strand, within Sama_1551at 1888.154 kb on + strand, within Sama_1551at 1888.154 kb on + strand, within Sama_1551at 1888.155 kb on - strand, within Sama_1551at 1888.160 kb on + strand, within Sama_1551at 1888.161 kb on - strand, within Sama_1551at 1888.209 kb on - strand, within Sama_1551at 1888.314 kb on - strand, within Sama_1551at 1888.431 kb on + strand, within Sama_1551at 1888.464 kb on + strand, within Sama_1551at 1888.464 kb on + strand, within Sama_1551at 1888.511 kb on + strand, within Sama_1551at 1888.512 kb on - strand, within Sama_1551at 1888.575 kb on + strand, within Sama_1551at 1888.622 kb on + strand, within Sama_1551at 1888.622 kb on + strand, within Sama_1551at 1888.623 kb on - strand, within Sama_1551at 1888.623 kb on - strand, within Sama_1551at 1888.749 kb on + strandat 1888.749 kb on + strandat 1888.750 kb on - strandat 1888.831 kb on + strandat 1888.831 kb on + strandat 1888.832 kb on - strandat 1888.844 kb on - strandat 1889.798 kb on + strandat 1889.798 kb on + strandat 1889.851 kb on - strandat 1889.884 kb on + strandat 1889.885 kb on - strandat 1889.885 kb on - strandat 1889.921 kb on - strandat 1889.938 kb on + strandat 1889.938 kb on + strandat 1889.938 kb on + strandat 1889.938 kb on + strandat 1889.939 kb on - strandat 1889.939 kb on - strandat 1889.939 kb on - strandat 1889.939 kb on - strandat 1889.939 kb on - strandat 1889.939 kb on - strandat 1889.940 kb on + strandat 1889.940 kb on + strandat 1889.940 kb on + strandat 1889.940 kb on + strandat 1889.941 kb on - strandat 1889.941 kb on - strandat 1889.941 kb on - strandat 1889.941 kb on - strandat 1889.941 kb on - strandat 1889.941 kb on - strandat 1889.958 kb on + strandat 1890.005 kb on + strand, within Sama_1553at 1890.049 kb on + strand, within Sama_1553at 1890.049 kb on + strand, within Sama_1553at 1890.049 kb on + strand, within Sama_1553at 1890.050 kb on - strand, within Sama_1553at 1890.050 kb on - strand, within Sama_1553at 1890.053 kb on + strand, within Sama_1553at 1890.054 kb on - strand, within Sama_1553at 1890.092 kb on + strand, within Sama_1553at 1890.093 kb on - strand, within Sama_1553at 1890.097 kb on - strand, within Sama_1553at 1890.108 kb on + strand, within Sama_1553at 1890.149 kb on + strand, within Sama_1553at 1890.149 kb on + strand, within Sama_1553at 1890.149 kb on + strand, within Sama_1553at 1890.149 kb on + strand, within Sama_1553at 1890.149 kb on + strand, within Sama_1553at 1890.150 kb on - strand, within Sama_1553at 1890.183 kb on + strand, within Sama_1553at 1890.184 kb on - strand, within Sama_1553at 1890.184 kb on - strand, within Sama_1553at 1890.186 kb on + strand, within Sama_1553at 1890.186 kb on + strand, within Sama_1553at 1890.186 kb on + strand, within Sama_1553at 1890.186 kb on + strand, within Sama_1553at 1890.187 kb on - strand, within Sama_1553at 1890.187 kb on - strand, within Sama_1553at 1890.187 kb on - strand, within Sama_1553at 1890.187 kb on - strand, within Sama_1553at 1890.187 kb on - strand, within Sama_1553at 1890.215 kb on + strand, within Sama_1553at 1890.216 kb on - strand, within Sama_1553at 1890.216 kb on - strand, within Sama_1553at 1890.250 kb on + strand, within Sama_1553at 1890.250 kb on + strand, within Sama_1553at 1890.250 kb on + strand, within Sama_1553at 1890.251 kb on - strand, within Sama_1553at 1890.251 kb on - strand, within Sama_1553at 1890.251 kb on - strand, within Sama_1553at 1890.261 kb on + strand, within Sama_1553at 1890.261 kb on + strand, within Sama_1553at 1890.261 kb on + strand, within Sama_1553at 1890.261 kb on + strand, within Sama_1553at 1890.261 kb on + strand, within Sama_1553at 1890.262 kb on - strand, within Sama_1553at 1890.262 kb on - strand, within Sama_1553at 1890.262 kb on - strand, within Sama_1553at 1890.262 kb on - strand, within Sama_1553at 1890.328 kb on + strand, within Sama_1553at 1890.355 kb on - strand, within Sama_1553at 1890.365 kb on - strand, within Sama_1553at 1890.392 kb on + strand, within Sama_1553at 1890.392 kb on + strand, within Sama_1553at 1890.392 kb on + strand, within Sama_1553at 1890.392 kb on + strand, within Sama_1553at 1890.393 kb on - strand, within Sama_1553at 1890.393 kb on - strand, within Sama_1553at 1890.393 kb on - strand, within Sama_1553at 1890.395 kb on - strand, within Sama_1553at 1890.461 kb on - strand, within Sama_1553at 1890.602 kb on + strand, within Sama_1553at 1890.618 kb on - strand, within Sama_1553at 1890.618 kb on - strand, within Sama_1553at 1890.726 kb on + strand, within Sama_1553at 1890.727 kb on - strand, within Sama_1553

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.0109375 mg/ml
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1,887,946 + -0.5
1,887,947 - -1.8
1,888,004 - +1.0
1,888,057 + +0.9
1,888,058 - -0.6
1,888,066 + -1.1
1,888,111 + Sama_1551 0.14 -0.4
1,888,111 + Sama_1551 0.14 -0.1
1,888,112 - Sama_1551 0.14 +0.5
1,888,112 - Sama_1551 0.14 -0.4
1,888,154 + Sama_1551 0.20 +0.0
1,888,154 + Sama_1551 0.20 -3.1
1,888,155 - Sama_1551 0.20 -1.5
1,888,160 + Sama_1551 0.20 -0.5
1,888,161 - Sama_1551 0.20 -1.0
1,888,209 - Sama_1551 0.26 +0.4
1,888,314 - Sama_1551 0.39 -0.4
1,888,431 + Sama_1551 0.53 -0.2
1,888,464 + Sama_1551 0.57 +1.0
1,888,464 + Sama_1551 0.57 +0.2
1,888,511 + Sama_1551 0.63 +0.2
1,888,512 - Sama_1551 0.63 -1.5
1,888,575 + Sama_1551 0.70 -0.8
1,888,622 + Sama_1551 0.76 -0.3
1,888,622 + Sama_1551 0.76 -1.0
1,888,623 - Sama_1551 0.76 -0.2
1,888,623 - Sama_1551 0.76 +0.3
1,888,749 + -1.2
1,888,749 + -0.8
1,888,750 - -0.0
1,888,831 + +0.2
1,888,831 + +0.6
1,888,832 - +1.4
1,888,844 - -1.0
1,889,798 + +1.6
1,889,798 + -0.3
1,889,851 - -0.2
1,889,884 + +1.2
1,889,885 - -0.7
1,889,885 - -0.1
1,889,921 - +0.8
1,889,938 + +0.2
1,889,938 + -0.8
1,889,938 + +0.8
1,889,938 + -2.8
1,889,939 - +0.4
1,889,939 - -0.7
1,889,939 - +0.7
1,889,939 - +1.9
1,889,939 - -1.3
1,889,939 - +0.8
1,889,940 + +0.2
1,889,940 + +0.5
1,889,940 + +0.1
1,889,940 + -0.5
1,889,941 - -1.2
1,889,941 - -0.8
1,889,941 - +3.2
1,889,941 - -0.1
1,889,941 - -0.7
1,889,941 - -0.8
1,889,958 + +1.6
1,890,005 + Sama_1553 0.13 +1.2
1,890,049 + Sama_1553 0.16 -1.4
1,890,049 + Sama_1553 0.16 +0.8
1,890,049 + Sama_1553 0.16 +1.0
1,890,050 - Sama_1553 0.16 -0.4
1,890,050 - Sama_1553 0.16 +0.7
1,890,053 + Sama_1553 0.16 +1.6
1,890,054 - Sama_1553 0.16 +0.3
1,890,092 + Sama_1553 0.19 +0.6
1,890,093 - Sama_1553 0.19 +0.0
1,890,097 - Sama_1553 0.19 +0.5
1,890,108 + Sama_1553 0.20 +0.6
1,890,149 + Sama_1553 0.23 +0.3
1,890,149 + Sama_1553 0.23 +1.1
1,890,149 + Sama_1553 0.23 -1.8
1,890,149 + Sama_1553 0.23 -0.4
1,890,149 + Sama_1553 0.23 +1.1
1,890,150 - Sama_1553 0.23 +0.3
1,890,183 + Sama_1553 0.25 -1.3
1,890,184 - Sama_1553 0.25 -0.4
1,890,184 - Sama_1553 0.25 -0.8
1,890,186 + Sama_1553 0.25 +0.6
1,890,186 + Sama_1553 0.25 -0.9
1,890,186 + Sama_1553 0.25 +0.3
1,890,186 + Sama_1553 0.25 +0.9
1,890,187 - Sama_1553 0.25 +0.5
1,890,187 - Sama_1553 0.25 +0.1
1,890,187 - Sama_1553 0.25 +0.1
1,890,187 - Sama_1553 0.25 -0.7
1,890,187 - Sama_1553 0.25 -0.7
1,890,215 + Sama_1553 0.27 +0.4
1,890,216 - Sama_1553 0.27 -0.2
1,890,216 - Sama_1553 0.27 -0.5
1,890,250 + Sama_1553 0.29 +0.9
1,890,250 + Sama_1553 0.29 +1.1
1,890,250 + Sama_1553 0.29 +0.4
1,890,251 - Sama_1553 0.30 -2.6
1,890,251 - Sama_1553 0.30 +0.4
1,890,251 - Sama_1553 0.30 +0.4
1,890,261 + Sama_1553 0.30 -0.3
1,890,261 + Sama_1553 0.30 -1.2
1,890,261 + Sama_1553 0.30 -0.5
1,890,261 + Sama_1553 0.30 -0.8
1,890,261 + Sama_1553 0.30 +0.3
1,890,262 - Sama_1553 0.30 -0.8
1,890,262 - Sama_1553 0.30 -0.4
1,890,262 - Sama_1553 0.30 -0.2
1,890,262 - Sama_1553 0.30 -0.4
1,890,328 + Sama_1553 0.35 +0.9
1,890,355 - Sama_1553 0.37 -0.3
1,890,365 - Sama_1553 0.37 +1.6
1,890,392 + Sama_1553 0.39 +0.0
1,890,392 + Sama_1553 0.39 +0.5
1,890,392 + Sama_1553 0.39 +1.0
1,890,392 + Sama_1553 0.39 +1.6
1,890,393 - Sama_1553 0.39 -1.3
1,890,393 - Sama_1553 0.39 -0.7
1,890,393 - Sama_1553 0.39 +0.3
1,890,395 - Sama_1553 0.39 +0.3
1,890,461 - Sama_1553 0.44 -1.0
1,890,602 + Sama_1553 0.53 -1.5
1,890,618 - Sama_1553 0.54 -1.2
1,890,618 - Sama_1553 0.54 +1.0
1,890,726 + Sama_1553 0.62 -1.5
1,890,727 - Sama_1553 0.62 -1.0

Or see this region's nucleotide sequence