Experiment: A22 0.0109375 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1332 and Sama_1333 are separated by 64 nucleotides Sama_1333 and Sama_1334 overlap by 4 nucleotides Sama_1334 and Sama_1335 are separated by 197 nucleotides Sama_1335 and Sama_1336 are separated by 30 nucleotides
Sama_1332: Sama_1332 - lipoprotein releasing system transmembrane protein LolE (RefSeq), at 1,623,415 to 1,624,650
_1332
Sama_1333: Sama_1333 - lipoprotein releasing system ATP-binding protein LolD (RefSeq), at 1,624,715 to 1,625,404
_1333
Sama_1334: Sama_1334 - LolC/E family lipoprotein releasing system, transmembrane protein (RefSeq), at 1,625,401 to 1,626,663
_1334
Sama_1335: Sama_1335 - hypothetical protein (RefSeq), at 1,626,861 to 1,627,370
_1335
Sama_1336: Sama_1336 - DNA internalization-related competence protein ComEC/Rec2 (RefSeq), at 1,627,401 to 1,629,698
_1336
Position (kb)
1625
1626
1627 Strain fitness (log2 ratio)
-2
-1
0
1 at 1624.648 kb on + strand at 1624.663 kb on + strand at 1626.784 kb on + strand at 1626.785 kb on - strand at 1626.803 kb on - strand at 1627.371 kb on - strand at 1627.395 kb on - strand at 1627.395 kb on - strand at 1627.395 kb on - strand at 1627.570 kb on - strand at 1627.578 kb on - strand at 1627.637 kb on - strand, within Sama_1336 at 1627.637 kb on - strand, within Sama_1336 at 1627.640 kb on - strand, within Sama_1336 at 1627.640 kb on - strand, within Sama_1336 at 1627.640 kb on - strand, within Sama_1336 at 1627.640 kb on - strand, within Sama_1336
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.0109375 mg/ml remove 1,624,648 + +0.1 1,624,663 + +0.3 1,626,784 + -2.6 1,626,785 - -0.8 1,626,803 - -0.4 1,627,371 - -0.1 1,627,395 - -0.6 1,627,395 - -0.3 1,627,395 - -0.1 1,627,570 - -0.9 1,627,578 - -0.3 1,627,637 - Sama_1336 0.10 -0.0 1,627,637 - Sama_1336 0.10 -0.5 1,627,640 - Sama_1336 0.10 +0.0 1,627,640 - Sama_1336 0.10 +0.1 1,627,640 - Sama_1336 0.10 -1.0 1,627,640 - Sama_1336 0.10 +0.0
Or see this region's nucleotide sequence