Strain Fitness in Shewanella amazonensis SB2B around Sama_1334

Experiment: A22 0.0109375 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1332 and Sama_1333 are separated by 64 nucleotidesSama_1333 and Sama_1334 overlap by 4 nucleotidesSama_1334 and Sama_1335 are separated by 197 nucleotidesSama_1335 and Sama_1336 are separated by 30 nucleotides Sama_1332: Sama_1332 - lipoprotein releasing system transmembrane protein LolE (RefSeq), at 1,623,415 to 1,624,650 _1332 Sama_1333: Sama_1333 - lipoprotein releasing system ATP-binding protein LolD (RefSeq), at 1,624,715 to 1,625,404 _1333 Sama_1334: Sama_1334 - LolC/E family lipoprotein releasing system, transmembrane protein (RefSeq), at 1,625,401 to 1,626,663 _1334 Sama_1335: Sama_1335 - hypothetical protein (RefSeq), at 1,626,861 to 1,627,370 _1335 Sama_1336: Sama_1336 - DNA internalization-related competence protein ComEC/Rec2 (RefSeq), at 1,627,401 to 1,629,698 _1336 Position (kb) 1625 1626 1627Strain fitness (log2 ratio) -2 -1 0 1at 1624.648 kb on + strandat 1624.663 kb on + strandat 1626.784 kb on + strandat 1626.785 kb on - strandat 1626.803 kb on - strandat 1627.371 kb on - strandat 1627.395 kb on - strandat 1627.395 kb on - strandat 1627.395 kb on - strandat 1627.570 kb on - strandat 1627.578 kb on - strandat 1627.637 kb on - strand, within Sama_1336at 1627.637 kb on - strand, within Sama_1336at 1627.640 kb on - strand, within Sama_1336at 1627.640 kb on - strand, within Sama_1336at 1627.640 kb on - strand, within Sama_1336at 1627.640 kb on - strand, within Sama_1336

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.0109375 mg/ml
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1,624,648 + +0.1
1,624,663 + +0.3
1,626,784 + -2.6
1,626,785 - -0.8
1,626,803 - -0.4
1,627,371 - -0.1
1,627,395 - -0.6
1,627,395 - -0.3
1,627,395 - -0.1
1,627,570 - -0.9
1,627,578 - -0.3
1,627,637 - Sama_1336 0.10 -0.0
1,627,637 - Sama_1336 0.10 -0.5
1,627,640 - Sama_1336 0.10 +0.0
1,627,640 - Sama_1336 0.10 +0.1
1,627,640 - Sama_1336 0.10 -1.0
1,627,640 - Sama_1336 0.10 +0.0

Or see this region's nucleotide sequence