Strain Fitness in Shewanella oneidensis MR-1 around SO4371

Experiment: Vancomycin 0.03 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vancomycin 0.03 mg/ml
4,563,451	-		SO4368	0.48	+0.1
4,563,513	+		SO4368	0.73	-0.7
4,563,518	+		SO4368	0.75	-0.1
4,563,537	-		SO4368	0.82	-0.6
4,563,575	+				-0.4
4,563,575	+				-1.0
4,563,583	-				+0.3
4,563,588	-				+0.1
4,563,592	+				-0.0
4,563,677	+		SO4369	0.34	+1.4
4,563,692	-		SO4369	0.40	-0.1
4,563,710	+		SO4369	0.47	-0.5
4,563,710	+		SO4369	0.47	-1.4
4,563,710	+		SO4369	0.47	-2.9
4,563,718	-		SO4369	0.51	-1.6
4,563,718	-		SO4369	0.51	-0.4
4,563,817	+				+0.4
4,563,817	+				-1.0
4,563,835	+				-0.4
4,563,858	-				-0.8
4,563,950	-		SO4370	0.20	-0.4
4,564,078	+		SO4370	0.43	-0.3
4,564,086	-		SO4370	0.45	-0.6
4,564,086	-		SO4370	0.45	-2.8
4,564,102	+		SO4370	0.48	-0.5
4,564,110	-		SO4370	0.49	-0.4
4,564,198	-		SO4370	0.65	-0.1
4,564,328	-		SO4370	0.89	-0.2
4,564,412	+				-1.1
4,564,451	-				+0.9
4,564,451	-				-0.1
4,564,451	-				-0.0
4,564,564	+		SO4371	0.13	-0.2
4,564,581	+		SO4371	0.14	-0.6
4,564,704	+		SO4371	0.23	-0.2
4,564,712	-		SO4371	0.24	-0.5
4,564,712	-		SO4371	0.24	-1.3
4,564,724	+		SO4371	0.25	-0.8
4,564,790	-		SO4371	0.30	-0.3
4,564,807	+		SO4371	0.31	-0.9
4,564,880	+		SO4371	0.36	-1.4
4,564,888	-		SO4371	0.37	+0.4
4,565,007	-		SO4371	0.46	-0.2
4,565,289	-		SO4371	0.66	+0.1
4,565,328	-		SO4371	0.69	-0.2
4,565,398	-		SO4371	0.74	+0.0
4,565,469	+		SO4371	0.79	-0.6
4,565,532	-		SO4371	0.84	-0.5
4,565,555	-		SO4371	0.86	-0.6
4,565,613	+				-0.6
4,565,695	+				+0.5
4,565,701	+				-2.2
4,565,709	-				+0.7
4,565,709	-				-0.9
4,565,803	-		SO4372	0.16	+0.0
4,565,867	+		SO4372	0.33	-0.9
4,565,898	+		SO4372	0.42	-0.3
4,565,906	-		SO4372	0.44	-1.3
4,565,906	-		SO4372	0.44	-0.6
4,566,143	+				-0.1
4,566,217	+				+0.0
4,566,242	+				-0.2
4,566,304	-				-0.3
4,566,304	-				-0.9
4,566,311	+				-0.3
4,566,319	-				+0.1
4,566,405	+		SO4373	0.14	-0.6
4,566,480	-		SO4373	0.19	-0.8
4,566,484	+		SO4373	0.19	-0.8
4,566,632	-		SO4373	0.27	-0.3