Strain Fitness in Shewanella oneidensis MR-1 around SO2047

Experiment: Vancomycin 0.03 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vancomycin 0.03 mg/ml
2,144,191	+		SO2045	0.81	-0.9
2,144,398	+				-0.1
2,144,423	+				-0.2
2,144,423	+				-0.1
2,144,431	-				+0.0
2,144,552	-		SO2046	0.29	+0.5
2,144,576	-		SO2046	0.34	-0.1
2,144,758	+		SO2046	0.73	-0.3
2,144,806	-		SO2046	0.84	+1.2
2,144,817	+		SO2046	0.86	+0.4
2,144,895	-				-0.6
2,145,031	+				-0.8
2,145,031	+				-1.0
2,145,039	-				+0.3
2,145,039	-				+0.3
2,145,056	-				+0.4
2,145,124	+				-1.5
2,145,124	+				-0.8
2,145,148	+				-0.4
2,145,148	+				+1.0
2,145,148	+				-0.1
2,145,148	+				+0.9
2,145,156	-				-0.9
2,145,156	-				+0.3
2,145,166	-				-0.2
2,145,166	-				+0.2
2,145,166	-				-0.0
2,145,216	+				+0.0
2,145,279	-				+0.4
2,145,306	+				+0.5
2,145,361	+		SO2047	0.12	-0.4
2,145,388	-		SO2047	0.13	-0.6
2,145,536	+		SO2047	0.20	+0.3
2,145,549	-		SO2047	0.21	-0.0
2,145,964	+		SO2047	0.41	-0.3
2,145,972	-		SO2047	0.41	+0.4
2,146,056	+		SO2047	0.45	-0.4
2,146,059	-		SO2047	0.45	+0.3
2,146,110	+		SO2047	0.48	-0.2
2,146,274	+		SO2047	0.56	+0.1
2,146,288	-		SO2047	0.56	-0.1
2,146,294	-		SO2047	0.57	-0.1
2,146,512	+		SO2047	0.67	-0.1
2,146,539	+		SO2047	0.68	-0.2
2,146,590	+		SO2047	0.71	+0.5
2,146,590	+		SO2047	0.71	+0.2
2,146,600	+		SO2047	0.71	-0.0
2,146,603	-		SO2047	0.71	+0.6
2,146,607	+		SO2047	0.72	-0.3
2,146,650	-		SO2047	0.74	-0.0
2,146,720	+		SO2047	0.77	+0.5
2,146,782	-		SO2047	0.80	-0.5
2,146,792	+		SO2047	0.80	-0.1
2,146,792	-		SO2047	0.80	-0.1
2,146,810	-		SO2047	0.81	-0.1
2,146,810	-		SO2047	0.81	+0.2
2,146,815	+		SO2047	0.82	+0.1
2,146,833	-		SO2047	0.82	-0.4
2,146,942	-		SO2047	0.88	+0.4
2,146,965	+		SO2047	0.89	+0.6
2,146,973	-		SO2047	0.89	+0.3
2,146,973	-		SO2047	0.89	-0.2
2,146,973	-		SO2047	0.89	-0.1
2,146,973	-		SO2047	0.89	+0.3
2,147,012	+				+0.2
2,147,020	-				-0.4
2,147,025	+				-0.5
2,147,032	+				+1.1
2,147,269	+				-0.8
2,147,421	+				-2.1
2,147,493	-				-0.6
2,147,630	-		SO2048	0.11	-0.4
2,147,682	+		SO2048	0.15	-0.2
2,147,692	-		SO2048	0.15	+0.2
2,147,933	+		SO2048	0.30	-0.2
2,147,997	+		SO2048	0.34	-0.9
2,147,997	+		SO2048	0.34	+0.0
2,148,159	+		SO2048	0.44	+0.3