Strain Fitness in Shewanella oneidensis MR-1 around SO1556

Experiment: Vancomycin 0.03 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vancomycin 0.03 mg/ml
1,631,171	-		SO_1554	0.31	-1.7
1,631,213	-		SO_1554	0.35	+0.8
1,631,241	+		SO_1554	0.37	-0.2
1,631,260	+		SO_1554	0.39	+0.2
1,631,276	+		SO_1554	0.41	-0.4
1,631,278	-		SO_1554	0.41	-0.5
1,631,342	+		SO_1554	0.47	-0.1
1,631,342	+		SO_1554	0.47	-0.8
1,631,434	+		SO_1554	0.55	-0.3
1,631,435	+		SO_1554	0.55	-0.5
1,631,443	-		SO_1554	0.56	+0.0
1,631,521	+		SO_1554	0.63	-0.0
1,631,564	+		SO_1554	0.67	-0.5
1,631,629	-		SO_1554	0.73	+1.7
1,631,783	-		SO_1554	0.87	-0.6
1,631,789	-		SO_1554	0.88	-0.4
1,631,861	-				+0.1
1,631,963	-				-0.2
1,631,963	-				+0.3
1,631,977	+				-0.3
1,632,023	+				-0.4
1,632,063	+				+0.4
1,632,072	-				-0.0
1,632,092	+				+0.1
1,632,100	-				+0.3
1,632,102	+				-0.9
1,632,115	+				+0.1
1,632,123	-				-0.9
1,632,138	+				-0.5
1,632,148	+				-0.9
1,632,148	+				-0.1
1,632,167	-				-2.0
1,632,203	-				-1.6
1,632,288	+		SO1556	0.18	-1.1
1,632,330	+		SO1556	0.23	-0.4
1,632,376	-		SO1556	0.28	-1.9
1,632,387	-		SO1556	0.29	-2.1
1,632,420	+		SO1556	0.32	-1.3
1,632,478	+		SO1556	0.39	-2.7
1,632,534	+		SO1556	0.45	-0.5
1,632,565	+		SO1556	0.48	-0.6
1,632,573	-		SO1556	0.49	+0.8
1,632,712	-		SO1556	0.64	+0.2
1,632,868	+		SO1556	0.81	-0.1
1,632,878	-		SO1556	0.82	-1.5
1,632,924	+		SO1556	0.87	-1.5
1,632,978	+				-1.7
1,633,203	-				-0.6
1,633,361	+				+0.5
1,633,364	-				+0.4
1,633,381	+				-0.2
1,633,389	-				+0.6
1,633,407	+				-0.4
1,633,428	+				-0.6
1,633,493	-		SO1557	0.17	-0.4
1,633,563	-		SO1557	0.24	+0.1
1,633,647	-		SO1557	0.33	+0.1
1,633,680	+		SO1557	0.36	-1.4
1,633,688	-		SO1557	0.37	+0.1
1,633,756	+		SO1557	0.44	-0.0
1,633,772	+		SO1557	0.45	-0.3
1,633,772	+		SO1557	0.45	-0.7
1,633,772	+		SO1557	0.45	+0.1
1,633,780	-		SO1557	0.46	+0.3
1,633,875	+		SO1557	0.56	+0.0
1,633,931	+		SO1557	0.62	+0.4
1,633,931	+		SO1557	0.62	-1.7
1,633,982	-		SO1557	0.67	-0.6
1,633,988	+		SO1557	0.68	-0.3
1,633,998	+		SO1557	0.69	-0.2
1,634,019	+		SO1557	0.71	+0.1