Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0908 and Psest_0909 overlap by 1 nucleotides Psest_0909 and Psest_0910 are separated by 51 nucleotides Psest_0910 and Psest_0911 are separated by 94 nucleotides Psest_0911 and Psest_0912 are separated by 208 nucleotides
Psest_0908: Psest_0908 - hypothetical protein, at 986,202 to 986,606
_0908
Psest_0909: Psest_0909 - hypothetical protein, at 986,606 to 986,920
_0909
Psest_0910: Psest_0910 - hypothetical protein, at 986,972 to 987,343
_0910
Psest_0911: Psest_0911 - Inhibitor of the KinA pathway to sporulation, predicted exonuclease, at 987,438 to 988,091
_0911
Psest_0912: Psest_0912 - Tellurite resistance protein TerB., at 988,300 to 990,783
_0912
Position (kb) 986
987
988 Strain fitness (log2 ratio) -2
-1
0
1 at 985.978 kb on - strand at 986.017 kb on - strand at 986.021 kb on - strand at 986.082 kb on - strand at 986.122 kb on + strand at 986.129 kb on + strand at 986.130 kb on - strand at 986.179 kb on + strand at 986.179 kb on + strand at 986.180 kb on - strand at 986.190 kb on + strand at 986.221 kb on + strand at 986.226 kb on + strand at 986.226 kb on + strand at 986.227 kb on - strand at 986.424 kb on + strand, within Psest_0908 at 986.424 kb on + strand, within Psest_0908 at 986.424 kb on + strand, within Psest_0908 at 986.424 kb on + strand, within Psest_0908 at 986.424 kb on + strand, within Psest_0908 at 986.425 kb on - strand, within Psest_0908 at 986.442 kb on + strand, within Psest_0908 at 986.442 kb on + strand, within Psest_0908 at 986.442 kb on + strand, within Psest_0908 at 986.443 kb on - strand, within Psest_0908 at 986.484 kb on - strand, within Psest_0908 at 986.484 kb on - strand, within Psest_0908 at 986.484 kb on - strand, within Psest_0908 at 986.534 kb on + strand, within Psest_0908 at 986.534 kb on + strand, within Psest_0908 at 986.534 kb on + strand, within Psest_0908 at 986.541 kb on + strand, within Psest_0908 at 986.542 kb on - strand, within Psest_0908 at 986.542 kb on - strand, within Psest_0908 at 986.542 kb on - strand, within Psest_0908 at 986.585 kb on + strand at 986.586 kb on - strand at 986.620 kb on - strand at 986.637 kb on + strand at 986.637 kb on + strand at 986.637 kb on + strand at 986.680 kb on + strand, within Psest_0909 at 986.681 kb on - strand, within Psest_0909 at 986.681 kb on - strand, within Psest_0909 at 986.814 kb on - strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.873 kb on + strand, within Psest_0909 at 986.873 kb on + strand, within Psest_0909 at 986.873 kb on + strand, within Psest_0909 at 986.874 kb on - strand, within Psest_0909 at 986.888 kb on - strand, within Psest_0909 at 986.904 kb on - strand at 987.012 kb on + strand, within Psest_0910 at 987.013 kb on - strand, within Psest_0910 at 987.013 kb on - strand, within Psest_0910 at 987.041 kb on - strand, within Psest_0910 at 987.083 kb on + strand, within Psest_0910 at 987.140 kb on + strand, within Psest_0910 at 987.140 kb on + strand, within Psest_0910 at 987.140 kb on + strand, within Psest_0910 at 987.141 kb on - strand, within Psest_0910 at 987.141 kb on - strand, within Psest_0910 at 987.183 kb on + strand, within Psest_0910 at 987.183 kb on + strand, within Psest_0910 at 987.184 kb on - strand, within Psest_0910 at 987.184 kb on - strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.315 kb on + strand at 987.362 kb on - strand at 987.362 kb on - strand at 987.364 kb on + strand at 987.364 kb on + strand at 987.365 kb on - strand at 987.367 kb on - strand at 987.405 kb on + strand at 987.406 kb on - strand at 987.406 kb on - strand at 987.406 kb on - strand at 987.445 kb on + strand at 987.503 kb on - strand at 987.537 kb on + strand, within Psest_0911 at 987.577 kb on + strand, within Psest_0911 at 987.577 kb on + strand, within Psest_0911 at 987.577 kb on + strand, within Psest_0911 at 987.577 kb on + strand, within Psest_0911 at 987.578 kb on - strand, within Psest_0911 at 987.578 kb on - strand, within Psest_0911 at 987.703 kb on + strand, within Psest_0911 at 987.733 kb on + strand, within Psest_0911 at 987.733 kb on + strand, within Psest_0911 at 987.733 kb on + strand, within Psest_0911 at 987.734 kb on - strand, within Psest_0911 at 987.734 kb on - strand, within Psest_0911 at 987.775 kb on + strand, within Psest_0911 at 987.776 kb on - strand, within Psest_0911 at 987.776 kb on - strand, within Psest_0911 at 987.776 kb on - strand, within Psest_0911 at 987.776 kb on - strand, within Psest_0911 at 987.776 kb on - strand, within Psest_0911 at 987.812 kb on + strand, within Psest_0911 at 987.813 kb on - strand, within Psest_0911 at 987.847 kb on - strand, within Psest_0911 at 987.889 kb on + strand, within Psest_0911 at 987.889 kb on + strand, within Psest_0911 at 987.890 kb on - strand, within Psest_0911 at 987.895 kb on + strand, within Psest_0911 at 987.895 kb on + strand, within Psest_0911 at 987.895 kb on + strand, within Psest_0911 at 987.895 kb on + strand, within Psest_0911 at 987.895 kb on + strand, within Psest_0911 at 987.895 kb on + strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.917 kb on + strand, within Psest_0911 at 987.925 kb on + strand, within Psest_0911 at 987.925 kb on + strand, within Psest_0911 at 987.925 kb on + strand, within Psest_0911 at 987.926 kb on - strand, within Psest_0911 at 987.926 kb on - strand, within Psest_0911 at 987.926 kb on - strand, within Psest_0911 at 987.991 kb on + strand, within Psest_0911 at 987.991 kb on + strand, within Psest_0911 at 987.992 kb on - strand, within Psest_0911 at 987.992 kb on - strand, within Psest_0911 at 988.064 kb on - strand at 988.089 kb on + strand at 988.090 kb on - strand at 988.092 kb on + strand at 988.200 kb on - strand at 988.200 kb on - strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.217 kb on - strand at 988.217 kb on - strand at 988.217 kb on - strand at 988.217 kb on - strand at 988.217 kb on - strand at 988.217 kb on - strand at 988.217 kb on - strand at 988.217 kb on - strand at 988.231 kb on + strand at 988.232 kb on - strand at 988.232 kb on - strand at 988.283 kb on + strand at 988.283 kb on + strand at 988.283 kb on + strand at 988.283 kb on + strand at 988.284 kb on - strand at 988.284 kb on - strand at 988.284 kb on - strand at 988.284 kb on - strand at 988.284 kb on - strand at 988.284 kb on - strand at 988.286 kb on - strand at 988.314 kb on + strand at 988.338 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 985,978 - -0.1 986,017 - -0.1 986,021 - -0.2 986,082 - +1.0 986,122 + +0.2 986,129 + +1.2 986,130 - -0.1 986,179 + +0.4 986,179 + +0.8 986,180 - +0.6 986,190 + -0.7 986,221 + +1.2 986,226 + +0.0 986,226 + +0.8 986,227 - -0.0 986,424 + Psest_0908 0.55 +0.3 986,424 + Psest_0908 0.55 +0.2 986,424 + Psest_0908 0.55 -1.7 986,424 + Psest_0908 0.55 +0.0 986,424 + Psest_0908 0.55 -0.0 986,425 - Psest_0908 0.55 -0.5 986,442 + Psest_0908 0.59 -1.3 986,442 + Psest_0908 0.59 +0.2 986,442 + Psest_0908 0.59 -0.2 986,443 - Psest_0908 0.60 +0.8 986,484 - Psest_0908 0.70 +0.6 986,484 - Psest_0908 0.70 -0.5 986,484 - Psest_0908 0.70 +0.6 986,534 + Psest_0908 0.82 +0.7 986,534 + Psest_0908 0.82 -0.7 986,534 + Psest_0908 0.82 -0.2 986,541 + Psest_0908 0.84 +0.6 986,542 - Psest_0908 0.84 -1.2 986,542 - Psest_0908 0.84 -0.4 986,542 - Psest_0908 0.84 +0.2 986,585 + -0.1 986,586 - -0.9 986,620 - -0.7 986,637 + -0.2 986,637 + -0.1 986,637 + +0.2 986,680 + Psest_0909 0.23 -0.2 986,681 - Psest_0909 0.24 +0.4 986,681 - Psest_0909 0.24 +0.5 986,814 - Psest_0909 0.66 -0.1 986,835 + Psest_0909 0.73 +0.6 986,835 + Psest_0909 0.73 +0.1 986,835 + Psest_0909 0.73 +0.5 986,835 + Psest_0909 0.73 +0.6 986,835 + Psest_0909 0.73 +0.3 986,836 - Psest_0909 0.73 +0.5 986,836 - Psest_0909 0.73 -0.1 986,836 - Psest_0909 0.73 +1.0 986,836 - Psest_0909 0.73 +1.2 986,836 - Psest_0909 0.73 -1.6 986,836 - Psest_0909 0.73 +0.1 986,836 - Psest_0909 0.73 +0.0 986,873 + Psest_0909 0.85 +0.1 986,873 + Psest_0909 0.85 +0.1 986,873 + Psest_0909 0.85 +1.1 986,874 - Psest_0909 0.85 +0.5 986,888 - Psest_0909 0.90 -0.4 986,904 - +0.3 987,012 + Psest_0910 0.11 +0.9 987,013 - Psest_0910 0.11 -1.1 987,013 - Psest_0910 0.11 +0.7 987,041 - Psest_0910 0.19 +0.5 987,083 + Psest_0910 0.30 +0.5 987,140 + Psest_0910 0.45 -0.4 987,140 + Psest_0910 0.45 +0.5 987,140 + Psest_0910 0.45 +0.4 987,141 - Psest_0910 0.45 -0.5 987,141 - Psest_0910 0.45 +1.3 987,183 + Psest_0910 0.57 +0.4 987,183 + Psest_0910 0.57 +0.3 987,184 - Psest_0910 0.57 -1.2 987,184 - Psest_0910 0.57 +0.2 987,242 + Psest_0910 0.73 +1.4 987,242 + Psest_0910 0.73 +0.2 987,242 + Psest_0910 0.73 +0.4 987,242 + Psest_0910 0.73 +1.0 987,242 + Psest_0910 0.73 +0.2 987,242 + Psest_0910 0.73 -1.0 987,242 + Psest_0910 0.73 +1.0 987,242 + Psest_0910 0.73 +0.5 987,243 - Psest_0910 0.73 +1.3 987,243 - Psest_0910 0.73 -0.6 987,243 - Psest_0910 0.73 +0.2 987,243 - Psest_0910 0.73 +0.3 987,243 - Psest_0910 0.73 +0.4 987,315 + +0.4 987,362 - -1.2 987,362 - +1.1 987,364 + +1.0 987,364 + +0.4 987,365 - +1.4 987,367 - +1.2 987,405 + +0.1 987,406 - +0.4 987,406 - -1.5 987,406 - +1.0 987,445 + +0.2 987,503 - +0.7 987,537 + Psest_0911 0.15 -0.6 987,577 + Psest_0911 0.21 +0.0 987,577 + Psest_0911 0.21 +0.4 987,577 + Psest_0911 0.21 +0.9 987,577 + Psest_0911 0.21 -0.7 987,578 - Psest_0911 0.21 +0.3 987,578 - Psest_0911 0.21 +0.5 987,703 + Psest_0911 0.41 +1.1 987,733 + Psest_0911 0.45 -2.2 987,733 + Psest_0911 0.45 +0.1 987,733 + Psest_0911 0.45 +0.5 987,734 - Psest_0911 0.45 -0.7 987,734 - Psest_0911 0.45 -0.2 987,775 + Psest_0911 0.52 -0.2 987,776 - Psest_0911 0.52 +0.5 987,776 - Psest_0911 0.52 -1.7 987,776 - Psest_0911 0.52 -0.1 987,776 - Psest_0911 0.52 +0.8 987,776 - Psest_0911 0.52 -1.2 987,812 + Psest_0911 0.57 +1.3 987,813 - Psest_0911 0.57 +0.3 987,847 - Psest_0911 0.63 -2.3 987,889 + Psest_0911 0.69 -2.0 987,889 + Psest_0911 0.69 +0.5 987,890 - Psest_0911 0.69 +0.4 987,895 + Psest_0911 0.70 +0.3 987,895 + Psest_0911 0.70 +0.7 987,895 + Psest_0911 0.70 +0.2 987,895 + Psest_0911 0.70 -0.0 987,895 + Psest_0911 0.70 -1.2 987,895 + Psest_0911 0.70 +0.4 987,896 - Psest_0911 0.70 +0.2 987,896 - Psest_0911 0.70 +0.4 987,896 - Psest_0911 0.70 -0.2 987,896 - Psest_0911 0.70 +0.8 987,896 - Psest_0911 0.70 +0.2 987,896 - Psest_0911 0.70 +0.4 987,896 - Psest_0911 0.70 -0.3 987,896 - Psest_0911 0.70 +0.3 987,896 - Psest_0911 0.70 +0.4 987,896 - Psest_0911 0.70 +0.2 987,896 - Psest_0911 0.70 +0.3 987,896 - Psest_0911 0.70 -0.2 987,896 - Psest_0911 0.70 +0.6 987,896 - Psest_0911 0.70 -0.4 987,896 - Psest_0911 0.70 -0.0 987,896 - Psest_0911 0.70 -0.2 987,917 + Psest_0911 0.73 -0.5 987,925 + Psest_0911 0.74 -0.6 987,925 + Psest_0911 0.74 +0.2 987,925 + Psest_0911 0.74 +1.1 987,926 - Psest_0911 0.75 +1.6 987,926 - Psest_0911 0.75 -1.2 987,926 - Psest_0911 0.75 +1.1 987,991 + Psest_0911 0.85 +0.3 987,991 + Psest_0911 0.85 -0.3 987,992 - Psest_0911 0.85 +0.7 987,992 - Psest_0911 0.85 +0.3 988,064 - +1.0 988,089 + +0.0 988,090 - +0.1 988,092 + +0.2 988,200 - +0.8 988,200 - -1.0 988,216 + -1.5 988,216 + -0.9 988,216 + +0.1 988,216 + +0.3 988,216 + +1.4 988,216 + -0.1 988,216 + -0.4 988,216 + +0.4 988,216 + +0.5 988,216 + +0.2 988,216 + +0.0 988,216 + -0.2 988,216 + -1.0 988,216 + -0.2 988,216 + +1.4 988,216 + +0.1 988,216 + -0.0 988,217 - +0.6 988,217 - -0.3 988,217 - +0.1 988,217 - -1.1 988,217 - +0.4 988,217 - -0.4 988,217 - -0.4 988,217 - -1.7 988,231 + -0.6 988,232 - -0.3 988,232 - -1.7 988,283 + +0.4 988,283 + -0.2 988,283 + -0.6 988,283 + +0.0 988,284 - -0.2 988,284 - +0.3 988,284 - +0.4 988,284 - -0.6 988,284 - +1.6 988,284 - -0.1 988,286 - -0.2 988,314 + -0.2 988,338 - -0.0
Or see this region's nucleotide sequence