Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0862

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0861 and Psest_0862 overlap by 4 nucleotidesPsest_0862 and Psest_0863 are separated by 252 nucleotides Psest_0861: Psest_0861 - hypothetical protein, at 933,412 to 934,527 _0861 Psest_0862: Psest_0862 - Glycosidases, at 934,524 to 936,596 _0862 Psest_0863: Psest_0863 - maltose ABC transporter, substrate-binding component MalE (from data), at 936,849 to 938,036 _0863 Position (kb) 934 935 936 937Strain fitness (log2 ratio) -2 -1 0 1 2at 933.564 kb on + strand, within Psest_0861at 933.669 kb on - strand, within Psest_0861at 933.785 kb on + strand, within Psest_0861at 933.785 kb on + strand, within Psest_0861at 933.844 kb on + strand, within Psest_0861at 933.939 kb on - strand, within Psest_0861at 934.008 kb on + strand, within Psest_0861at 934.009 kb on - strand, within Psest_0861at 934.160 kb on + strand, within Psest_0861at 934.580 kb on - strandat 934.783 kb on + strand, within Psest_0862at 934.783 kb on + strand, within Psest_0862at 934.894 kb on + strand, within Psest_0862at 934.895 kb on - strand, within Psest_0862at 934.940 kb on - strand, within Psest_0862at 935.263 kb on + strand, within Psest_0862at 935.264 kb on - strand, within Psest_0862at 935.489 kb on - strand, within Psest_0862at 935.752 kb on + strand, within Psest_0862at 935.824 kb on + strand, within Psest_0862at 935.824 kb on + strand, within Psest_0862at 935.825 kb on - strand, within Psest_0862at 936.069 kb on + strand, within Psest_0862at 936.454 kb on + strandat 936.613 kb on - strandat 936.821 kb on + strandat 936.822 kb on - strandat 936.822 kb on - strandat 936.822 kb on - strandat 936.822 kb on - strandat 936.822 kb on - strandat 936.824 kb on + strandat 936.824 kb on + strandat 936.824 kb on + strandat 936.824 kb on + strandat 936.825 kb on - strandat 936.870 kb on - strandat 936.973 kb on - strand, within Psest_0863at 936.974 kb on + strand, within Psest_0863at 937.103 kb on + strand, within Psest_0863at 937.103 kb on + strand, within Psest_0863at 937.103 kb on + strand, within Psest_0863at 937.103 kb on + strand, within Psest_0863at 937.104 kb on - strand, within Psest_0863at 937.104 kb on - strand, within Psest_0863at 937.218 kb on + strand, within Psest_0863at 937.219 kb on - strand, within Psest_0863at 937.219 kb on - strand, within Psest_0863at 937.219 kb on - strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strandat 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.272 kb on + strand, within Psest_0863at 937.273 kb on - strand, within Psest_0863at 937.273 kb on - strand, within Psest_0863at 937.273 kb on - strand, within Psest_0863at 937.273 kb on - strand, within Psest_0863at 937.274 kb on + strand, within Psest_0863at 937.274 kb on + strand, within Psest_0863at 937.275 kb on - strand, within Psest_0863at 937.275 kb on - strand, within Psest_0863at 937.374 kb on + strand, within Psest_0863at 937.374 kb on + strand, within Psest_0863at 937.374 kb on + strand, within Psest_0863at 937.375 kb on - strand, within Psest_0863at 937.375 kb on - strand, within Psest_0863at 937.375 kb on - strand, within Psest_0863at 937.386 kb on + strand, within Psest_0863at 937.386 kb on + strand, within Psest_0863at 937.386 kb on + strand, within Psest_0863at 937.386 kb on + strand, within Psest_0863at 937.386 kb on + strand, within Psest_0863at 937.386 kb on + strand, within Psest_0863at 937.386 kb on + strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.387 kb on - strand, within Psest_0863at 937.551 kb on + strand, within Psest_0863

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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933,564 + Psest_0861 0.14 +0.9
933,669 - Psest_0861 0.23 -0.1
933,785 + Psest_0861 0.33 +0.9
933,785 + Psest_0861 0.33 -1.7
933,844 + Psest_0861 0.39 +0.3
933,939 - Psest_0861 0.47 -0.9
934,008 + Psest_0861 0.53 -1.3
934,009 - Psest_0861 0.53 -0.9
934,160 + Psest_0861 0.67 +0.1
934,580 - +1.9
934,783 + Psest_0862 0.12 +0.9
934,783 + Psest_0862 0.12 -1.1
934,894 + Psest_0862 0.18 -1.7
934,895 - Psest_0862 0.18 -0.1
934,940 - Psest_0862 0.20 +1.3
935,263 + Psest_0862 0.36 -0.1
935,264 - Psest_0862 0.36 +0.9
935,489 - Psest_0862 0.47 -1.5
935,752 + Psest_0862 0.59 +0.9
935,824 + Psest_0862 0.63 +0.9
935,824 + Psest_0862 0.63 +0.9
935,825 - Psest_0862 0.63 -0.7
936,069 + Psest_0862 0.75 -0.7
936,454 + +1.9
936,613 - +0.9
936,821 + +0.3
936,822 - -1.1
936,822 - +1.3
936,822 - -0.1
936,822 - -1.5
936,822 - -1.1
936,824 + -1.6
936,824 + -1.0
936,824 + +1.5
936,824 + -0.5
936,825 - +0.9
936,870 - +1.9
936,973 - Psest_0863 0.10 +0.9
936,974 + Psest_0863 0.11 +0.6
937,103 + Psest_0863 0.21 -1.5
937,103 + Psest_0863 0.21 -0.9
937,103 + Psest_0863 0.21 +0.4
937,103 + Psest_0863 0.21 -0.4
937,104 - Psest_0863 0.21 +0.5
937,104 - Psest_0863 0.21 -0.1
937,218 + Psest_0863 0.31 +1.0
937,219 - Psest_0863 0.31 +1.9
937,219 - Psest_0863 0.31 -0.9
937,219 - Psest_0863 0.31 +1.6
937,272 + Psest_0863 0.36 -1.3
937,272 + Psest_0863 0.36 -0.7
937,272 + Psest_0863 0.36 -0.7
937,272 + Psest_0863 0.36 +1.2
937,272 + Psest_0863 0.36 -0.5
937,272 + +0.9
937,272 + Psest_0863 0.36 +0.7
937,272 + Psest_0863 0.36 -1.5
937,272 + Psest_0863 0.36 +0.3
937,272 + Psest_0863 0.36 +1.9
937,272 + Psest_0863 0.36 -1.5
937,272 + Psest_0863 0.36 -0.1
937,272 + Psest_0863 0.36 -1.6
937,273 - Psest_0863 0.36 -1.9
937,273 - Psest_0863 0.36 -1.7
937,273 - Psest_0863 0.36 -1.1
937,273 - Psest_0863 0.36 +1.9
937,274 + Psest_0863 0.36 +0.3
937,274 + Psest_0863 0.36 -1.6
937,275 - Psest_0863 0.36 -0.7
937,275 - Psest_0863 0.36 -1.1
937,374 + Psest_0863 0.44 -1.1
937,374 + Psest_0863 0.44 -0.1
937,374 + Psest_0863 0.44 -2.3
937,375 - Psest_0863 0.44 +0.9
937,375 - Psest_0863 0.44 -2.3
937,375 - Psest_0863 0.44 +1.9
937,386 + Psest_0863 0.45 -1.0
937,386 + Psest_0863 0.45 -0.1
937,386 + Psest_0863 0.45 -0.7
937,386 + Psest_0863 0.45 +0.3
937,386 + Psest_0863 0.45 -0.7
937,386 + Psest_0863 0.45 -0.1
937,386 + Psest_0863 0.45 +0.3
937,387 - Psest_0863 0.45 +0.0
937,387 - Psest_0863 0.45 +0.3
937,387 - Psest_0863 0.45 +0.9
937,387 - Psest_0863 0.45 +1.9
937,387 - Psest_0863 0.45 +0.3
937,387 - Psest_0863 0.45 +1.5
937,387 - Psest_0863 0.45 -0.5
937,387 - Psest_0863 0.45 +0.1
937,387 - Psest_0863 0.45 -1.3
937,387 - Psest_0863 0.45 +0.2
937,387 - Psest_0863 0.45 +0.3
937,387 - Psest_0863 0.45 +0.9
937,387 - Psest_0863 0.45 -1.7
937,551 + Psest_0863 0.59 +0.9

Or see this region's nucleotide sequence