Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0861

Experiment: 5-Hydroxymethylfurfural 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0860 and Psest_0861 are separated by 160 nucleotidesPsest_0861 and Psest_0862 overlap by 4 nucleotides Psest_0860: Psest_0860 - Glycosidases, at 931,605 to 933,251 _0860 Psest_0861: Psest_0861 - hypothetical protein, at 933,412 to 934,527 _0861 Psest_0862: Psest_0862 - Glycosidases, at 934,524 to 936,596 _0862 Position (kb) 933 934 935Strain fitness (log2 ratio) -2 -1 0 1 2at 932.622 kb on + strand, within Psest_0860at 932.622 kb on + strand, within Psest_0860at 932.623 kb on - strand, within Psest_0860at 932.628 kb on + strand, within Psest_0860at 932.629 kb on - strand, within Psest_0860at 932.629 kb on - strand, within Psest_0860at 932.629 kb on - strand, within Psest_0860at 932.629 kb on - strand, within Psest_0860at 932.662 kb on - strand, within Psest_0860at 932.662 kb on - strand, within Psest_0860at 932.662 kb on - strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.676 kb on + strand, within Psest_0860at 932.677 kb on - strand, within Psest_0860at 932.677 kb on - strand, within Psest_0860at 932.677 kb on - strand, within Psest_0860at 932.677 kb on - strand, within Psest_0860at 932.677 kb on - strand, within Psest_0860at 932.677 kb on - strand, within Psest_0860at 932.677 kb on - strand, within Psest_0860at 932.677 kb on - strand, within Psest_0860at 933.263 kb on - strandat 933.414 kb on - strandat 933.451 kb on + strandat 933.451 kb on + strandat 933.452 kb on - strandat 933.564 kb on + strand, within Psest_0861at 933.669 kb on - strand, within Psest_0861at 933.785 kb on + strand, within Psest_0861at 933.785 kb on + strand, within Psest_0861at 933.844 kb on + strand, within Psest_0861at 933.939 kb on - strand, within Psest_0861at 934.008 kb on + strand, within Psest_0861at 934.009 kb on - strand, within Psest_0861at 934.160 kb on + strand, within Psest_0861at 934.580 kb on - strandat 934.783 kb on + strand, within Psest_0862at 934.783 kb on + strand, within Psest_0862at 934.894 kb on + strand, within Psest_0862at 934.895 kb on - strand, within Psest_0862at 934.940 kb on - strand, within Psest_0862at 935.263 kb on + strand, within Psest_0862at 935.264 kb on - strand, within Psest_0862at 935.489 kb on - strand, within Psest_0862

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
remove
932,622 + Psest_0860 0.62 -0.1
932,622 + Psest_0860 0.62 -1.9
932,623 - Psest_0860 0.62 -0.0
932,628 + Psest_0860 0.62 -0.1
932,629 - Psest_0860 0.62 -0.9
932,629 - Psest_0860 0.62 -1.5
932,629 - Psest_0860 0.62 -0.3
932,629 - Psest_0860 0.62 +0.2
932,662 - Psest_0860 0.64 -0.7
932,662 - Psest_0860 0.64 +0.2
932,662 - Psest_0860 0.64 -0.7
932,676 + Psest_0860 0.65 +1.5
932,676 + Psest_0860 0.65 +0.3
932,676 + Psest_0860 0.65 +1.2
932,676 + Psest_0860 0.65 +0.9
932,676 + Psest_0860 0.65 +0.9
932,676 + Psest_0860 0.65 -1.7
932,676 + Psest_0860 0.65 +2.5
932,676 + Psest_0860 0.65 +0.3
932,676 + Psest_0860 0.65 -1.1
932,676 + Psest_0860 0.65 +0.9
932,677 - Psest_0860 0.65 -0.1
932,677 - Psest_0860 0.65 -0.5
932,677 - Psest_0860 0.65 +1.9
932,677 - Psest_0860 0.65 -1.1
932,677 - Psest_0860 0.65 -0.5
932,677 - Psest_0860 0.65 -1.8
932,677 - Psest_0860 0.65 +1.4
932,677 - Psest_0860 0.65 -0.1
933,263 - +0.5
933,414 - -1.7
933,451 + +0.2
933,451 + -0.7
933,452 - +0.4
933,564 + Psest_0861 0.14 +0.9
933,669 - Psest_0861 0.23 -0.1
933,785 + Psest_0861 0.33 +0.9
933,785 + Psest_0861 0.33 -1.7
933,844 + Psest_0861 0.39 +0.3
933,939 - Psest_0861 0.47 -0.9
934,008 + Psest_0861 0.53 -1.3
934,009 - Psest_0861 0.53 -0.9
934,160 + Psest_0861 0.67 +0.1
934,580 - +1.9
934,783 + Psest_0862 0.12 +0.9
934,783 + Psest_0862 0.12 -1.1
934,894 + Psest_0862 0.18 -1.7
934,895 - Psest_0862 0.18 -0.1
934,940 - Psest_0862 0.20 +1.3
935,263 + Psest_0862 0.36 -0.1
935,264 - Psest_0862 0.36 +0.9
935,489 - Psest_0862 0.47 -1.5

Or see this region's nucleotide sequence