Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0859

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0858 and Psest_0859 are separated by 122 nucleotidesPsest_0859 and Psest_0860 are separated by 387 nucleotides Psest_0858: Psest_0858 - Maltose operon periplasmic protein precursor (MalM)., at 928,879 to 929,802 _0858 Psest_0859: Psest_0859 - Maltoporin (phage lambda and maltose receptor), at 929,925 to 931,217 _0859 Psest_0860: Psest_0860 - Glycosidases, at 931,605 to 933,251 _0860 Position (kb) 929 930 931 932Strain fitness (log2 ratio) -2 -1 0 1 2 3at 929.012 kb on + strand, within Psest_0858at 929.012 kb on + strand, within Psest_0858at 929.012 kb on + strand, within Psest_0858at 929.013 kb on - strand, within Psest_0858at 929.096 kb on - strand, within Psest_0858at 929.099 kb on + strand, within Psest_0858at 929.099 kb on + strand, within Psest_0858at 929.099 kb on + strand, within Psest_0858at 929.100 kb on - strand, within Psest_0858at 929.158 kb on + strand, within Psest_0858at 929.222 kb on + strand, within Psest_0858at 929.279 kb on + strand, within Psest_0858at 929.280 kb on - strand, within Psest_0858at 929.381 kb on + strand, within Psest_0858at 929.381 kb on + strand, within Psest_0858at 929.381 kb on + strand, within Psest_0858at 929.382 kb on - strand, within Psest_0858at 929.382 kb on - strand, within Psest_0858at 929.382 kb on - strand, within Psest_0858at 929.382 kb on - strandat 929.382 kb on - strand, within Psest_0858at 929.382 kb on - strand, within Psest_0858at 929.382 kb on - strand, within Psest_0858at 929.382 kb on - strand, within Psest_0858at 929.382 kb on - strand, within Psest_0858at 929.382 kb on - strand, within Psest_0858at 929.477 kb on + strand, within Psest_0858at 929.478 kb on - strand, within Psest_0858at 929.478 kb on - strand, within Psest_0858at 929.556 kb on - strand, within Psest_0858at 929.912 kb on + strandat 929.912 kb on + strandat 929.912 kb on + strandat 929.912 kb on + strandat 929.912 kb on + strandat 929.912 kb on + strandat 929.913 kb on - strandat 929.913 kb on - strandat 929.927 kb on - strandat 930.004 kb on + strandat 930.028 kb on + strandat 930.028 kb on + strandat 930.028 kb on + strandat 930.028 kb on + strandat 930.028 kb on + strandat 930.028 kb on + strandat 930.028 kb on + strandat 930.029 kb on - strandat 930.029 kb on - strandat 930.029 kb on - strandat 930.029 kb on - strandat 930.196 kb on + strand, within Psest_0859at 930.196 kb on + strand, within Psest_0859at 930.196 kb on + strand, within Psest_0859at 930.196 kb on + strand, within Psest_0859at 930.197 kb on - strand, within Psest_0859at 930.262 kb on + strand, within Psest_0859at 930.262 kb on + strand, within Psest_0859at 930.263 kb on - strand, within Psest_0859at 930.263 kb on - strand, within Psest_0859at 930.263 kb on - strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.274 kb on + strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.275 kb on - strand, within Psest_0859at 930.415 kb on + strand, within Psest_0859at 930.416 kb on - strand, within Psest_0859at 930.478 kb on + strand, within Psest_0859at 930.524 kb on - strand, within Psest_0859at 930.730 kb on + strand, within Psest_0859at 930.731 kb on - strand, within Psest_0859at 930.731 kb on - strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.733 kb on + strand, within Psest_0859at 930.734 kb on - strand, within Psest_0859at 930.734 kb on - strand, within Psest_0859at 930.734 kb on - strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.766 kb on + strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.767 kb on - strand, within Psest_0859at 930.938 kb on - strand, within Psest_0859at 930.958 kb on + strand, within Psest_0859at 930.959 kb on - strand, within Psest_0859at 931.012 kb on + strand, within Psest_0859at 931.012 kb on + strand, within Psest_0859at 931.013 kb on - strand, within Psest_0859at 931.039 kb on + strand, within Psest_0859at 931.040 kb on - strand, within Psest_0859at 931.242 kb on - strandat 931.323 kb on + strandat 931.369 kb on - strandat 931.382 kb on - strandat 931.455 kb on + strandat 931.598 kb on + strandat 931.599 kb on - strandat 931.773 kb on + strand, within Psest_0860at 931.774 kb on - strand, within Psest_0860at 931.774 kb on - strand, within Psest_0860at 931.899 kb on + strand, within Psest_0860at 931.899 kb on + strand, within Psest_0860at 931.899 kb on + strand, within Psest_0860at 931.900 kb on - strand, within Psest_0860at 931.900 kb on - strand, within Psest_0860at 931.932 kb on + strand, within Psest_0860at 931.998 kb on + strand, within Psest_0860at 931.999 kb on - strand, within Psest_0860at 932.178 kb on + strand, within Psest_0860

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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929,012 + Psest_0858 0.14 -0.5
929,012 + Psest_0858 0.14 -2.1
929,012 + Psest_0858 0.14 -1.1
929,013 - Psest_0858 0.15 +0.7
929,096 - Psest_0858 0.23 +0.9
929,099 + Psest_0858 0.24 -0.7
929,099 + Psest_0858 0.24 -0.1
929,099 + Psest_0858 0.24 -1.5
929,100 - Psest_0858 0.24 -0.7
929,158 + Psest_0858 0.30 +0.9
929,222 + Psest_0858 0.37 +0.3
929,279 + Psest_0858 0.43 +0.3
929,280 - Psest_0858 0.43 -0.5
929,381 + Psest_0858 0.54 +1.9
929,381 + Psest_0858 0.54 +0.3
929,381 + Psest_0858 0.54 -0.1
929,382 - Psest_0858 0.54 +0.9
929,382 - Psest_0858 0.54 +0.9
929,382 - Psest_0858 0.54 -0.7
929,382 - +1.9
929,382 - Psest_0858 0.54 -1.5
929,382 - Psest_0858 0.54 -0.1
929,382 - Psest_0858 0.54 -1.7
929,382 - Psest_0858 0.54 -0.7
929,382 - Psest_0858 0.54 -0.7
929,382 - Psest_0858 0.54 +2.1
929,477 + Psest_0858 0.65 -0.1
929,478 - Psest_0858 0.65 -2.1
929,478 - Psest_0858 0.65 -1.1
929,556 - Psest_0858 0.73 +0.9
929,912 + +0.5
929,912 + -0.7
929,912 + -0.6
929,912 + -1.5
929,912 + -0.6
929,912 + -0.6
929,913 - -0.1
929,913 - -1.5
929,927 - -0.8
930,004 + +0.1
930,028 + -0.5
930,028 + -1.1
930,028 + -0.7
930,028 + -0.6
930,028 + -0.1
930,028 + +2.5
930,028 + +0.1
930,029 - -0.9
930,029 - -1.5
930,029 - -0.4
930,029 - -0.1
930,196 + Psest_0859 0.21 -1.9
930,196 + Psest_0859 0.21 -0.1
930,196 + Psest_0859 0.21 -1.2
930,196 + Psest_0859 0.21 -0.7
930,197 - Psest_0859 0.21 -0.1
930,262 + Psest_0859 0.26 +0.2
930,262 + Psest_0859 0.26 +2.5
930,263 - Psest_0859 0.26 -0.7
930,263 - Psest_0859 0.26 -1.5
930,263 - Psest_0859 0.26 +0.9
930,274 + Psest_0859 0.27 -1.1
930,274 + Psest_0859 0.27 -1.9
930,274 + Psest_0859 0.27 -0.7
930,274 + Psest_0859 0.27 -0.9
930,274 + Psest_0859 0.27 -0.1
930,274 + Psest_0859 0.27 +0.9
930,274 + Psest_0859 0.27 -1.0
930,274 + Psest_0859 0.27 +3.2
930,274 + Psest_0859 0.27 -0.1
930,274 + Psest_0859 0.27 +1.9
930,274 + Psest_0859 0.27 -0.7
930,274 + Psest_0859 0.27 -2.1
930,274 + Psest_0859 0.27 -0.7
930,275 - Psest_0859 0.27 +1.5
930,275 - Psest_0859 0.27 -1.7
930,275 - Psest_0859 0.27 +1.9
930,275 - Psest_0859 0.27 +0.1
930,275 - Psest_0859 0.27 -1.7
930,275 - Psest_0859 0.27 -1.0
930,275 - Psest_0859 0.27 -0.5
930,275 - Psest_0859 0.27 +0.1
930,275 - Psest_0859 0.27 -1.3
930,275 - Psest_0859 0.27 +0.3
930,275 - Psest_0859 0.27 -0.9
930,415 + Psest_0859 0.38 -0.5
930,416 - Psest_0859 0.38 -0.5
930,478 + Psest_0859 0.43 -1.1
930,524 - Psest_0859 0.46 -1.5
930,730 + Psest_0859 0.62 -0.6
930,731 - Psest_0859 0.62 -0.1
930,731 - Psest_0859 0.62 -0.1
930,733 + Psest_0859 0.62 -2.6
930,733 + Psest_0859 0.62 +1.9
930,733 + Psest_0859 0.62 -0.1
930,733 + Psest_0859 0.62 -0.1
930,733 + Psest_0859 0.62 +0.9
930,733 + Psest_0859 0.62 -0.9
930,733 + Psest_0859 0.62 +0.3
930,733 + Psest_0859 0.62 -1.2
930,733 + Psest_0859 0.62 -1.5
930,733 + Psest_0859 0.62 +0.5
930,733 + Psest_0859 0.62 -0.5
930,734 - Psest_0859 0.63 +1.5
930,734 - Psest_0859 0.63 +0.9
930,734 - Psest_0859 0.63 -0.3
930,766 + Psest_0859 0.65 +0.3
930,766 + Psest_0859 0.65 -0.1
930,766 + Psest_0859 0.65 -0.7
930,766 + Psest_0859 0.65 +0.7
930,766 + Psest_0859 0.65 -0.1
930,766 + Psest_0859 0.65 +1.3
930,766 + Psest_0859 0.65 -0.5
930,767 - Psest_0859 0.65 -1.7
930,767 - Psest_0859 0.65 +1.2
930,767 - Psest_0859 0.65 -1.4
930,767 - Psest_0859 0.65 +0.9
930,767 - Psest_0859 0.65 +0.1
930,767 - Psest_0859 0.65 +0.3
930,767 - Psest_0859 0.65 -1.1
930,767 - Psest_0859 0.65 +0.9
930,938 - Psest_0859 0.78 -0.7
930,958 + Psest_0859 0.80 -0.9
930,959 - Psest_0859 0.80 -1.1
931,012 + Psest_0859 0.84 -0.7
931,012 + Psest_0859 0.84 -0.1
931,013 - Psest_0859 0.84 -0.1
931,039 + Psest_0859 0.86 +0.0
931,040 - Psest_0859 0.86 +0.6
931,242 - -0.7
931,323 + -0.7
931,369 - -1.1
931,382 - +1.6
931,455 + -0.1
931,598 + +0.4
931,599 - -0.7
931,773 + Psest_0860 0.10 +0.9
931,774 - Psest_0860 0.10 -1.9
931,774 - Psest_0860 0.10 -1.1
931,899 + Psest_0860 0.18 -0.9
931,899 + Psest_0860 0.18 -0.1
931,899 + Psest_0860 0.18 +0.9
931,900 - Psest_0860 0.18 +0.3
931,900 - Psest_0860 0.18 -0.4
931,932 + Psest_0860 0.20 -0.4
931,998 + Psest_0860 0.24 +0.9
931,999 - Psest_0860 0.24 -0.7
932,178 + Psest_0860 0.35 -0.6

Or see this region's nucleotide sequence