Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0847

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0845 and Psest_0846 overlap by 1 nucleotidesPsest_0846 and Psest_0847 are separated by 270 nucleotidesPsest_0847 and Psest_0848 are separated by 231 nucleotidesPsest_0848 and Psest_0849 are separated by 98 nucleotides Psest_0845: Psest_0845 - hypothetical protein, at 915,475 to 915,813 _0845 Psest_0846: Psest_0846 - Uncharacterized protein probably involved in high-affinity Fe2+ transport, at 915,813 to 916,346 _0846 Psest_0847: Psest_0847 - drug resistance transporter, EmrB/QacA subfamily, at 916,617 to 918,044 _0847 Psest_0848: Psest_0848 - hypothetical protein, at 918,276 to 918,536 _0848 Psest_0849: Psest_0849 - 6-phosphogluconate dehydratase, at 918,635 to 920,461 _0849 Position (kb) 916 917 918 919Strain fitness (log2 ratio) -2 -1 0 1 2 3at 915.729 kb on - strand, within Psest_0845at 915.857 kb on - strandat 915.955 kb on + strand, within Psest_0846at 915.955 kb on + strand, within Psest_0846at 915.956 kb on - strand, within Psest_0846at 915.956 kb on - strand, within Psest_0846at 915.967 kb on + strand, within Psest_0846at 916.081 kb on + strand, within Psest_0846at 916.082 kb on - strand, within Psest_0846at 916.082 kb on - strand, within Psest_0846at 916.455 kb on + strandat 916.475 kb on + strandat 916.475 kb on + strandat 916.584 kb on + strandat 916.636 kb on + strandat 916.636 kb on + strandat 916.637 kb on - strandat 916.637 kb on - strandat 916.788 kb on + strand, within Psest_0847at 916.788 kb on + strand, within Psest_0847at 916.788 kb on + strand, within Psest_0847at 916.789 kb on - strand, within Psest_0847at 916.789 kb on - strand, within Psest_0847at 916.789 kb on - strand, within Psest_0847at 916.789 kb on - strand, within Psest_0847at 916.789 kb on - strand, within Psest_0847at 916.789 kb on - strand, within Psest_0847at 916.789 kb on - strand, within Psest_0847at 916.856 kb on + strand, within Psest_0847at 916.856 kb on + strand, within Psest_0847at 916.856 kb on + strand, within Psest_0847at 916.856 kb on + strand, within Psest_0847at 916.856 kb on + strand, within Psest_0847at 916.856 kb on + strand, within Psest_0847at 916.856 kb on + strand, within Psest_0847at 916.856 kb on + strand, within Psest_0847at 916.856 kb on + strand, within Psest_0847at 916.857 kb on - strand, within Psest_0847at 916.857 kb on - strand, within Psest_0847at 916.857 kb on - strand, within Psest_0847at 916.857 kb on - strand, within Psest_0847at 916.857 kb on - strand, within Psest_0847at 916.857 kb on - strand, within Psest_0847at 916.857 kb on - strand, within Psest_0847at 916.857 kb on - strand, within Psest_0847at 916.857 kb on - strand, within Psest_0847at 917.106 kb on + strand, within Psest_0847at 917.107 kb on - strand, within Psest_0847at 917.107 kb on - strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.294 kb on + strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.295 kb on - strand, within Psest_0847at 917.312 kb on - strand, within Psest_0847at 918.301 kb on + strandat 918.337 kb on + strand, within Psest_0848at 918.343 kb on + strand, within Psest_0848at 918.344 kb on - strand, within Psest_0848at 918.344 kb on - strand, within Psest_0848at 918.505 kb on + strand, within Psest_0848at 918.505 kb on + strand, within Psest_0848at 918.506 kb on - strand, within Psest_0848at 918.506 kb on - strand, within Psest_0848at 918.702 kb on - strandat 918.855 kb on - strand, within Psest_0849

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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915,729 - Psest_0845 0.75 -0.4
915,857 - +2.9
915,955 + Psest_0846 0.27 -1.1
915,955 + Psest_0846 0.27 -1.7
915,956 - Psest_0846 0.27 -0.9
915,956 - Psest_0846 0.27 -0.7
915,967 + Psest_0846 0.29 -0.1
916,081 + Psest_0846 0.50 +0.9
916,082 - Psest_0846 0.50 +0.9
916,082 - Psest_0846 0.50 -0.3
916,455 + -0.8
916,475 + +0.5
916,475 + -1.5
916,584 + +0.3
916,636 + -0.4
916,636 + +0.4
916,637 - -0.9
916,637 - -2.1
916,788 + Psest_0847 0.12 -0.9
916,788 + Psest_0847 0.12 -0.1
916,788 + Psest_0847 0.12 -1.2
916,789 - Psest_0847 0.12 -0.6
916,789 - Psest_0847 0.12 +0.6
916,789 - Psest_0847 0.12 +0.1
916,789 - Psest_0847 0.12 -0.9
916,789 - Psest_0847 0.12 +0.7
916,789 - Psest_0847 0.12 -0.1
916,789 - Psest_0847 0.12 -1.0
916,856 + Psest_0847 0.17 +1.6
916,856 + Psest_0847 0.17 +1.9
916,856 + Psest_0847 0.17 -0.7
916,856 + Psest_0847 0.17 +0.3
916,856 + Psest_0847 0.17 -0.3
916,856 + Psest_0847 0.17 -0.7
916,856 + Psest_0847 0.17 +0.3
916,856 + Psest_0847 0.17 -0.1
916,856 + Psest_0847 0.17 -0.4
916,857 - Psest_0847 0.17 +1.4
916,857 - Psest_0847 0.17 -0.4
916,857 - Psest_0847 0.17 +0.2
916,857 - Psest_0847 0.17 +0.5
916,857 - Psest_0847 0.17 +0.1
916,857 - Psest_0847 0.17 -1.1
916,857 - Psest_0847 0.17 -0.3
916,857 - Psest_0847 0.17 -0.5
916,857 - Psest_0847 0.17 +0.6
917,106 + Psest_0847 0.34 -0.7
917,107 - Psest_0847 0.34 -1.0
917,107 - Psest_0847 0.34 +1.9
917,294 + Psest_0847 0.47 -0.7
917,294 + Psest_0847 0.47 +0.2
917,294 + Psest_0847 0.47 +0.2
917,294 + Psest_0847 0.47 -0.7
917,294 + Psest_0847 0.47 -0.7
917,294 + Psest_0847 0.47 -0.7
917,294 + Psest_0847 0.47 +0.9
917,294 + Psest_0847 0.47 -0.5
917,294 + Psest_0847 0.47 +0.1
917,294 + Psest_0847 0.47 -1.1
917,294 + Psest_0847 0.47 +0.9
917,294 + Psest_0847 0.47 +0.1
917,294 + Psest_0847 0.47 -1.9
917,294 + Psest_0847 0.47 +1.4
917,294 + Psest_0847 0.47 +0.0
917,294 + Psest_0847 0.47 -0.4
917,294 + Psest_0847 0.47 +0.9
917,294 + Psest_0847 0.47 +1.0
917,294 + Psest_0847 0.47 +1.2
917,294 + Psest_0847 0.47 +1.3
917,294 + Psest_0847 0.47 -0.1
917,294 + Psest_0847 0.47 +0.0
917,294 + Psest_0847 0.47 -0.6
917,294 + Psest_0847 0.47 -0.6
917,294 + Psest_0847 0.47 -0.4
917,294 + Psest_0847 0.47 +1.1
917,294 + Psest_0847 0.47 +0.3
917,294 + Psest_0847 0.47 +2.4
917,294 + Psest_0847 0.47 -0.4
917,294 + Psest_0847 0.47 -0.7
917,295 - Psest_0847 0.47 +0.5
917,295 - Psest_0847 0.47 +0.3
917,295 - Psest_0847 0.47 +0.9
917,295 - Psest_0847 0.47 +1.0
917,295 - Psest_0847 0.47 +0.9
917,295 - Psest_0847 0.47 +0.6
917,295 - Psest_0847 0.47 +0.1
917,295 - Psest_0847 0.47 -0.6
917,295 - Psest_0847 0.47 -0.7
917,295 - Psest_0847 0.47 +1.7
917,295 - Psest_0847 0.47 -1.7
917,312 - Psest_0847 0.49 +1.2
918,301 + -0.1
918,337 + Psest_0848 0.23 -1.1
918,343 + Psest_0848 0.26 +0.9
918,344 - Psest_0848 0.26 +0.5
918,344 - Psest_0848 0.26 +0.2
918,505 + Psest_0848 0.88 +0.7
918,505 + Psest_0848 0.88 +0.3
918,506 - Psest_0848 0.88 -1.1
918,506 - Psest_0848 0.88 +0.4
918,702 - -0.2
918,855 - Psest_0849 0.12 +1.3

Or see this region's nucleotide sequence