Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0077 and Psest_0078 are separated by 30 nucleotides Psest_0078 and Psest_0079 are separated by 94 nucleotides Psest_0079 and Psest_0080 are separated by 143 nucleotides
Psest_0077: Psest_0077 - luciferase family oxidoreductase, group 1, at 78,457 to 79,455
_0077
Psest_0078: Psest_0078 - hypothetical protein, at 79,486 to 79,899
_0078
Psest_0079: Psest_0079 - hypothetical protein, at 79,994 to 80,419
_0079
Psest_0080: Psest_0080 - Predicted aminopeptidase, at 80,563 to 81,621
_0080
Position (kb) 79
80 Strain fitness (log2 ratio) -2
-1
0
1
2 at 78.526 kb on - strand at 78.726 kb on - strand, within Psest_0077 at 78.797 kb on + strand, within Psest_0077 at 78.797 kb on + strand, within Psest_0077 at 78.797 kb on + strand, within Psest_0077 at 78.798 kb on - strand, within Psest_0077 at 78.798 kb on - strand, within Psest_0077 at 78.798 kb on - strand, within Psest_0077 at 78.798 kb on - strand, within Psest_0077 at 78.798 kb on - strand, within Psest_0077 at 78.840 kb on - strand, within Psest_0077 at 78.864 kb on - strand, within Psest_0077 at 78.864 kb on - strand, within Psest_0077 at 78.864 kb on - strand, within Psest_0077 at 78.894 kb on - strand, within Psest_0077 at 79.460 kb on + strand at 79.733 kb on + strand, within Psest_0078 at 79.734 kb on - strand, within Psest_0078 at 80.046 kb on + strand, within Psest_0079 at 80.046 kb on + strand, within Psest_0079 at 80.046 kb on + strand, within Psest_0079 at 80.046 kb on + strand, within Psest_0079 at 80.046 kb on + strand, within Psest_0079 at 80.046 kb on + strand, within Psest_0079 at 80.047 kb on - strand, within Psest_0079 at 80.047 kb on - strand, within Psest_0079 at 80.061 kb on + strand, within Psest_0079 at 80.061 kb on + strand, within Psest_0079 at 80.062 kb on - strand, within Psest_0079 at 80.062 kb on - strand, within Psest_0079 at 80.137 kb on - strand, within Psest_0079 at 80.246 kb on + strand, within Psest_0079 at 80.246 kb on + strand, within Psest_0079 at 80.512 kb on + strand at 80.512 kb on + strand at 80.512 kb on + strand at 80.513 kb on - strand at 80.513 kb on - strand at 80.650 kb on + strand at 80.650 kb on + strand at 80.650 kb on + strand at 80.650 kb on + strand at 80.651 kb on - strand at 80.651 kb on - strand at 80.653 kb on + strand at 80.653 kb on + strand at 80.654 kb on - strand at 80.654 kb on - strand at 80.654 kb on - strand at 80.765 kb on + strand, within Psest_0080 at 80.766 kb on - strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.768 kb on + strand, within Psest_0080 at 80.769 kb on - strand, within Psest_0080 at 80.769 kb on - strand, within Psest_0080 at 80.769 kb on - strand, within Psest_0080 at 80.769 kb on - strand, within Psest_0080 at 80.830 kb on + strand, within Psest_0080 at 80.831 kb on - strand, within Psest_0080 at 80.831 kb on - strand, within Psest_0080 at 80.852 kb on - strand, within Psest_0080 at 80.852 kb on - strand, within Psest_0080 at 80.852 kb on - strand, within Psest_0080 at 80.852 kb on - strand, within Psest_0080
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 78,526 - -0.8 78,726 - Psest_0077 0.27 +1.0 78,797 + Psest_0077 0.34 -0.4 78,797 + Psest_0077 0.34 +0.8 78,797 + Psest_0077 0.34 -0.4 78,798 - Psest_0077 0.34 -0.1 78,798 - Psest_0077 0.34 +0.9 78,798 - Psest_0077 0.34 -0.4 78,798 - Psest_0077 0.34 -1.4 78,798 - Psest_0077 0.34 +0.2 78,840 - Psest_0077 0.38 +1.2 78,864 - Psest_0077 0.41 +0.4 78,864 - Psest_0077 0.41 -0.5 78,864 - Psest_0077 0.41 +1.2 78,894 - Psest_0077 0.44 +0.5 79,460 + -0.3 79,733 + Psest_0078 0.60 +0.8 79,734 - Psest_0078 0.60 +0.2 80,046 + Psest_0079 0.12 -0.1 80,046 + Psest_0079 0.12 -0.9 80,046 + Psest_0079 0.12 +0.2 80,046 + Psest_0079 0.12 +0.0 80,046 + Psest_0079 0.12 -0.8 80,046 + Psest_0079 0.12 -0.4 80,047 - Psest_0079 0.12 -0.4 80,047 - Psest_0079 0.12 -0.4 80,061 + Psest_0079 0.16 +0.7 80,061 + Psest_0079 0.16 +1.2 80,062 - Psest_0079 0.16 -0.5 80,062 - Psest_0079 0.16 +1.2 80,137 - Psest_0079 0.34 +0.4 80,246 + Psest_0079 0.59 -1.1 80,246 + Psest_0079 0.59 +0.5 80,512 + +1.7 80,512 + +0.1 80,512 + -0.4 80,513 - +0.6 80,513 - -1.1 80,650 + -0.2 80,650 + -1.6 80,650 + +0.2 80,650 + +2.2 80,651 - -0.8 80,651 - +0.4 80,653 + -0.0 80,653 + -0.5 80,654 - -0.0 80,654 - -0.2 80,654 - +0.9 80,765 + Psest_0080 0.19 -1.2 80,766 - Psest_0080 0.19 +1.0 80,768 + Psest_0080 0.19 -0.7 80,768 + Psest_0080 0.19 -1.5 80,768 + Psest_0080 0.19 -0.1 80,768 + Psest_0080 0.19 +1.3 80,768 + Psest_0080 0.19 -0.6 80,768 + Psest_0080 0.19 -0.4 80,768 + Psest_0080 0.19 -1.9 80,769 - Psest_0080 0.19 +0.6 80,769 - Psest_0080 0.19 +0.2 80,769 - Psest_0080 0.19 +0.2 80,769 - Psest_0080 0.19 -0.6 80,830 + Psest_0080 0.25 -0.2 80,831 - Psest_0080 0.25 -1.1 80,831 - Psest_0080 0.25 +0.6 80,852 - Psest_0080 0.27 +0.4 80,852 - Psest_0080 0.27 -0.6 80,852 - Psest_0080 0.27 -1.6 80,852 - Psest_0080 0.27 +1.2
Or see this region's nucleotide sequence