Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0661 and Psest_0662 are separated by 16 nucleotides Psest_0662 and Psest_0663 are separated by 72 nucleotides Psest_0663 and Psest_0664 are separated by 143 nucleotides
Psest_0661: Psest_0661 - PAS domain S-box, at 718,437 to 720,476
_0661
Psest_0662: Psest_0662 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 720,493 to 721,146
_0662
Psest_0663: Psest_0663 - PAS fold., at 721,219 to 723,018
_0663
Psest_0664: Psest_0664 - diguanylate cyclase (GGDEF) domain, at 723,162 to 724,652
_0664
Position (kb) 721
722
723
724 Strain fitness (log2 ratio) -2
-1
0
1
2 at 720.712 kb on + strand, within Psest_0662 at 720.760 kb on + strand, within Psest_0662 at 720.760 kb on + strand, within Psest_0662 at 720.761 kb on - strand, within Psest_0662 at 721.091 kb on + strand at 721.255 kb on + strand at 721.256 kb on - strand at 721.343 kb on + strand at 721.619 kb on + strand, within Psest_0663 at 721.619 kb on + strand, within Psest_0663 at 721.620 kb on - strand, within Psest_0663 at 721.620 kb on - strand, within Psest_0663 at 721.620 kb on - strand, within Psest_0663 at 721.620 kb on - strand, within Psest_0663 at 721.845 kb on + strand, within Psest_0663 at 722.176 kb on + strand, within Psest_0663 at 722.176 kb on + strand, within Psest_0663 at 722.176 kb on + strand, within Psest_0663 at 722.176 kb on + strand, within Psest_0663 at 722.177 kb on - strand, within Psest_0663 at 722.177 kb on - strand, within Psest_0663 at 722.177 kb on - strand, within Psest_0663 at 722.401 kb on - strand, within Psest_0663 at 722.567 kb on + strand, within Psest_0663 at 722.626 kb on - strand, within Psest_0663 at 722.666 kb on + strand, within Psest_0663 at 722.761 kb on + strand, within Psest_0663 at 722.872 kb on + strand at 722.905 kb on + strand at 722.906 kb on - strand at 723.024 kb on + strand at 723.197 kb on - strand at 723.237 kb on - strand at 723.427 kb on - strand, within Psest_0664 at 723.601 kb on + strand, within Psest_0664 at 723.601 kb on + strand, within Psest_0664 at 723.602 kb on - strand, within Psest_0664 at 723.702 kb on + strand, within Psest_0664 at 723.703 kb on - strand, within Psest_0664 at 723.703 kb on - strand, within Psest_0664 at 723.703 kb on - strand, within Psest_0664 at 723.703 kb on - strand, within Psest_0664 at 723.837 kb on + strand, within Psest_0664 at 723.838 kb on - strand, within Psest_0664 at 723.838 kb on - strand, within Psest_0664 at 723.870 kb on + strand, within Psest_0664 at 723.870 kb on + strand, within Psest_0664 at 723.870 kb on + strand, within Psest_0664 at 723.871 kb on - strand, within Psest_0664 at 723.871 kb on - strand, within Psest_0664 at 723.871 kb on - strand, within Psest_0664 at 723.947 kb on - strand, within Psest_0664
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 720,712 + Psest_0662 0.33 +1.0 720,760 + Psest_0662 0.41 +1.6 720,760 + Psest_0662 0.41 -1.1 720,761 - Psest_0662 0.41 +1.0 721,091 + +0.1 721,255 + -0.0 721,256 - -1.5 721,343 + -0.6 721,619 + Psest_0663 0.22 -0.3 721,619 + Psest_0663 0.22 +1.0 721,620 - Psest_0663 0.22 -1.2 721,620 - Psest_0663 0.22 +2.0 721,620 - Psest_0663 0.22 -0.2 721,620 - Psest_0663 0.22 -0.6 721,845 + Psest_0663 0.35 -1.8 722,176 + Psest_0663 0.53 -1.2 722,176 + Psest_0663 0.53 -1.6 722,176 + Psest_0663 0.53 +0.5 722,176 + Psest_0663 0.53 -1.0 722,177 - Psest_0663 0.53 -1.3 722,177 - Psest_0663 0.53 +1.0 722,177 - Psest_0663 0.53 +1.0 722,401 - Psest_0663 0.66 -0.3 722,567 + Psest_0663 0.75 +2.6 722,626 - Psest_0663 0.78 -0.8 722,666 + Psest_0663 0.80 -2.2 722,761 + Psest_0663 0.86 -0.6 722,872 + -0.3 722,905 + -1.0 722,906 - +0.7 723,024 + +1.3 723,197 - -1.8 723,237 - +0.2 723,427 - Psest_0664 0.18 -0.4 723,601 + Psest_0664 0.29 +0.2 723,601 + Psest_0664 0.29 -0.1 723,602 - Psest_0664 0.30 -0.7 723,702 + Psest_0664 0.36 +1.2 723,703 - Psest_0664 0.36 +2.3 723,703 - Psest_0664 0.36 +0.1 723,703 - Psest_0664 0.36 +0.4 723,703 - Psest_0664 0.36 -1.0 723,837 + Psest_0664 0.45 -0.4 723,838 - Psest_0664 0.45 +1.0 723,838 - Psest_0664 0.45 -0.3 723,870 + Psest_0664 0.47 +2.6 723,870 + Psest_0664 0.47 +1.2 723,870 + Psest_0664 0.47 -0.8 723,871 - Psest_0664 0.48 +1.8 723,871 - Psest_0664 0.48 -0.6 723,871 - Psest_0664 0.48 +1.0 723,947 - Psest_0664 0.53 -0.6
Or see this region's nucleotide sequence