Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0642 and Psest_0643 overlap by 4 nucleotides Psest_0643 and Psest_0644 are separated by 138 nucleotides Psest_0644 and Psest_0645 overlap by 17 nucleotides
Psest_0642: Psest_0642 - Geranylgeranyl pyrophosphate synthase, at 697,434 to 698,324
_0642
Psest_0643: Psest_0643 - exodeoxyribonuclease VII, small subunit, at 698,321 to 698,563
_0643
Psest_0644: Psest_0644 - siderophore ferric iron reductase, AHA_1954 family, at 698,702 to 699,463
_0644
Psest_0645: Psest_0645 - Siderophore synthetase component, at 699,447 to 701,255
_0645
Position (kb) 698
699
700 Strain fitness (log2 ratio) -2
-1
0
1
2 at 698.607 kb on + strand at 698.608 kb on - strand at 698.655 kb on + strand at 698.656 kb on - strand at 698.656 kb on - strand at 698.668 kb on - strand at 698.668 kb on - strand at 699.200 kb on + strand, within Psest_0644 at 699.200 kb on + strand, within Psest_0644 at 699.220 kb on - strand, within Psest_0644 at 699.220 kb on - strand, within Psest_0644 at 699.220 kb on - strand, within Psest_0644 at 699.220 kb on - strand, within Psest_0644 at 699.264 kb on + strand, within Psest_0644 at 699.264 kb on + strand, within Psest_0644 at 699.399 kb on - strand at 699.463 kb on + strand at 699.463 kb on + strand at 699.464 kb on - strand at 699.643 kb on + strand, within Psest_0645 at 699.946 kb on + strand, within Psest_0645 at 699.947 kb on - strand, within Psest_0645 at 699.947 kb on - strand, within Psest_0645 at 699.947 kb on - strand, within Psest_0645 at 699.947 kb on - strand, within Psest_0645 at 699.973 kb on + strand, within Psest_0645 at 699.974 kb on - strand, within Psest_0645 at 699.974 kb on - strand, within Psest_0645 at 700.186 kb on + strand, within Psest_0645 at 700.189 kb on + strand, within Psest_0645 at 700.190 kb on - strand, within Psest_0645 at 700.282 kb on + strand, within Psest_0645 at 700.282 kb on + strand, within Psest_0645 at 700.282 kb on + strand, within Psest_0645 at 700.282 kb on + strand, within Psest_0645 at 700.283 kb on - strand, within Psest_0645 at 700.283 kb on - strand, within Psest_0645 at 700.283 kb on - strand, within Psest_0645 at 700.283 kb on - strand, within Psest_0645 at 700.283 kb on - strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.312 kb on + strand, within Psest_0645 at 700.313 kb on - strand, within Psest_0645 at 700.313 kb on - strand, within Psest_0645 at 700.313 kb on - strand, within Psest_0645 at 700.313 kb on - strand, within Psest_0645 at 700.313 kb on - strand, within Psest_0645 at 700.313 kb on - strand, within Psest_0645 at 700.313 kb on - strand, within Psest_0645 at 700.313 kb on - strand, within Psest_0645 at 700.313 kb on - strand, within Psest_0645 at 700.313 kb on - strand, within Psest_0645 at 700.313 kb on - strand, within Psest_0645 at 700.313 kb on - strand, within Psest_0645 at 700.313 kb on - strand, within Psest_0645 at 700.453 kb on + strand, within Psest_0645 at 700.453 kb on + strand, within Psest_0645 at 700.454 kb on - strand, within Psest_0645 at 700.454 kb on - strand, within Psest_0645 at 700.454 kb on - strand, within Psest_0645
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 698,607 + +2.0 698,608 - -1.2 698,655 + +1.0 698,656 - -0.6 698,656 - -0.2 698,668 - -1.0 698,668 - -0.0 699,200 + Psest_0644 0.65 +1.0 699,200 + Psest_0644 0.65 +2.6 699,220 - Psest_0644 0.68 +0.4 699,220 - Psest_0644 0.68 -1.0 699,220 - Psest_0644 0.68 +1.0 699,220 - Psest_0644 0.68 +1.0 699,264 + Psest_0644 0.74 +0.7 699,264 + Psest_0644 0.74 -0.0 699,399 - +1.0 699,463 + +0.2 699,463 + -0.8 699,464 - -0.0 699,643 + Psest_0645 0.11 +0.6 699,946 + Psest_0645 0.28 +0.2 699,947 - Psest_0645 0.28 -0.0 699,947 - Psest_0645 0.28 +0.4 699,947 - Psest_0645 0.28 -0.0 699,947 - Psest_0645 0.28 +0.6 699,973 + Psest_0645 0.29 +1.0 699,974 - Psest_0645 0.29 -0.3 699,974 - Psest_0645 0.29 -0.0 700,186 + Psest_0645 0.41 -1.3 700,189 + Psest_0645 0.41 -1.5 700,190 - Psest_0645 0.41 -0.3 700,282 + Psest_0645 0.46 -0.3 700,282 + Psest_0645 0.46 +0.7 700,282 + Psest_0645 0.46 +0.1 700,282 + Psest_0645 0.46 +1.0 700,283 - Psest_0645 0.46 -0.6 700,283 - Psest_0645 0.46 -0.5 700,283 - Psest_0645 0.46 -0.0 700,283 - Psest_0645 0.46 +1.0 700,283 - Psest_0645 0.46 +2.0 700,312 + Psest_0645 0.48 -0.6 700,312 + Psest_0645 0.48 +0.1 700,312 + Psest_0645 0.48 -0.1 700,312 + Psest_0645 0.48 +0.2 700,312 + Psest_0645 0.48 +2.0 700,312 + Psest_0645 0.48 -0.6 700,312 + Psest_0645 0.48 -1.8 700,312 + Psest_0645 0.48 +0.4 700,312 + Psest_0645 0.48 +1.0 700,312 + Psest_0645 0.48 -0.6 700,312 + Psest_0645 0.48 -0.7 700,312 + Psest_0645 0.48 -0.0 700,312 + Psest_0645 0.48 +1.6 700,312 + Psest_0645 0.48 +1.4 700,312 + Psest_0645 0.48 +0.4 700,312 + Psest_0645 0.48 -0.1 700,312 + Psest_0645 0.48 -0.0 700,312 + Psest_0645 0.48 +1.0 700,312 + Psest_0645 0.48 -2.0 700,312 + Psest_0645 0.48 -1.8 700,313 - Psest_0645 0.48 +1.0 700,313 - Psest_0645 0.48 +1.6 700,313 - Psest_0645 0.48 -0.0 700,313 - Psest_0645 0.48 -1.3 700,313 - Psest_0645 0.48 +2.2 700,313 - Psest_0645 0.48 -0.8 700,313 - Psest_0645 0.48 +1.0 700,313 - Psest_0645 0.48 -0.1 700,313 - Psest_0645 0.48 -0.8 700,313 - Psest_0645 0.48 -0.0 700,313 - Psest_0645 0.48 +1.0 700,313 - Psest_0645 0.48 -1.0 700,313 - Psest_0645 0.48 -1.3 700,453 + Psest_0645 0.56 +0.4 700,453 + Psest_0645 0.56 -0.5 700,454 - Psest_0645 0.56 -0.0 700,454 - Psest_0645 0.56 +1.6 700,454 - Psest_0645 0.56 +1.2
Or see this region's nucleotide sequence