Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0635

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0634 and Psest_0635 are separated by 84 nucleotidesPsest_0635 and Psest_0636 are separated by 2 nucleotidesPsest_0636 and Psest_0637 are separated by 83 nucleotides Psest_0634: Psest_0634 - hypothetical protein, at 687,120 to 689,402 _0634 Psest_0635: Psest_0635 - ATP-dependent helicase HrpB, at 689,487 to 691,637 _0635 Psest_0636: Psest_0636 - Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 691,640 to 692,455 _0636 Psest_0637: Psest_0637 - Short-chain dehydrogenases of various substrate specificities, at 692,539 to 693,369 _0637 Position (kb) 689 690 691 692Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 688.755 kb on + strand, within Psest_0634at 688.782 kb on - strandat 688.889 kb on - strand, within Psest_0634at 688.889 kb on - strand, within Psest_0634at 688.923 kb on + strand, within Psest_0634at 688.924 kb on - strand, within Psest_0634at 689.065 kb on + strand, within Psest_0634at 689.065 kb on + strand, within Psest_0634at 689.108 kb on + strand, within Psest_0634at 689.108 kb on + strand, within Psest_0634at 689.108 kb on + strand, within Psest_0634at 689.108 kb on + strand, within Psest_0634at 689.109 kb on - strand, within Psest_0634at 689.239 kb on + strandat 689.239 kb on + strandat 689.240 kb on - strandat 689.270 kb on - strandat 689.270 kb on - strandat 689.270 kb on - strandat 689.270 kb on - strandat 689.366 kb on - strandat 689.439 kb on + strandat 689.452 kb on + strandat 689.452 kb on + strandat 689.452 kb on + strandat 689.460 kb on + strandat 689.460 kb on + strandat 689.461 kb on - strandat 689.461 kb on - strandat 689.461 kb on - strandat 689.461 kb on - strandat 689.466 kb on + strandat 690.059 kb on + strand, within Psest_0635at 690.279 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.836 kb on + strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.837 kb on - strand, within Psest_0635at 690.840 kb on + strand, within Psest_0635at 690.840 kb on + strand, within Psest_0635at 690.841 kb on - strand, within Psest_0635at 690.841 kb on - strand, within Psest_0635at 690.868 kb on + strand, within Psest_0635at 690.868 kb on + strand, within Psest_0635at 690.869 kb on - strand, within Psest_0635at 691.210 kb on - strand, within Psest_0635at 691.362 kb on + strand, within Psest_0635at 691.362 kb on + strand, within Psest_0635at 691.362 kb on + strand, within Psest_0635at 691.363 kb on - strand, within Psest_0635at 691.363 kb on - strand, within Psest_0635at 691.363 kb on - strand, within Psest_0635at 691.530 kb on + strandat 691.530 kb on + strandat 691.530 kb on + strandat 691.531 kb on - strandat 691.531 kb on - strandat 691.531 kb on - strandat 691.636 kb on - strandat 691.845 kb on + strand, within Psest_0636at 691.846 kb on - strand, within Psest_0636at 691.956 kb on + strand, within Psest_0636at 691.956 kb on + strand, within Psest_0636at 691.956 kb on + strand, within Psest_0636at 691.957 kb on - strand, within Psest_0636at 691.957 kb on - strand, within Psest_0636at 692.024 kb on - strand, within Psest_0636at 692.037 kb on + strand, within Psest_0636at 692.038 kb on - strand, within Psest_0636at 692.065 kb on + strand, within Psest_0636at 692.065 kb on + strand, within Psest_0636at 692.065 kb on + strand, within Psest_0636at 692.065 kb on + strand, within Psest_0636at 692.066 kb on - strand, within Psest_0636at 692.066 kb on - strand, within Psest_0636at 692.083 kb on + strand, within Psest_0636at 692.084 kb on - strand, within Psest_0636at 692.155 kb on - strand, within Psest_0636at 692.155 kb on - strand, within Psest_0636at 692.155 kb on - strand, within Psest_0636at 692.265 kb on + strand, within Psest_0636at 692.265 kb on + strand, within Psest_0636at 692.265 kb on + strand, within Psest_0636at 692.265 kb on + strand, within Psest_0636at 692.266 kb on - strand, within Psest_0636at 692.266 kb on - strand, within Psest_0636at 692.266 kb on - strand, within Psest_0636at 692.266 kb on - strand, within Psest_0636at 692.286 kb on + strand, within Psest_0636at 692.286 kb on + strand, within Psest_0636at 692.370 kb on + strand, within Psest_0636at 692.483 kb on + strandat 692.485 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.493 kb on + strandat 692.494 kb on - strandat 692.494 kb on - strandat 692.494 kb on - strandat 692.494 kb on - strandat 692.494 kb on - strandat 692.494 kb on - strandat 692.552 kb on + strandat 692.552 kb on + strandat 692.552 kb on + strandat 692.553 kb on - strandat 692.553 kb on - strandat 692.553 kb on - strandat 692.567 kb on + strandat 692.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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688,755 + Psest_0634 0.72 -0.6
688,782 - +1.0
688,889 - Psest_0634 0.77 -2.3
688,889 - Psest_0634 0.77 -0.2
688,923 + Psest_0634 0.79 +0.6
688,924 - Psest_0634 0.79 -0.2
689,065 + Psest_0634 0.85 +0.2
689,065 + Psest_0634 0.85 +0.2
689,108 + Psest_0634 0.87 -0.0
689,108 + Psest_0634 0.87 -0.0
689,108 + Psest_0634 0.87 -2.0
689,108 + Psest_0634 0.87 +2.0
689,109 - Psest_0634 0.87 -1.1
689,239 + -0.6
689,239 + -1.0
689,240 - -0.6
689,270 - -1.6
689,270 - -2.0
689,270 - +1.0
689,270 - -0.2
689,366 - +0.1
689,439 + -0.0
689,452 + +1.0
689,452 + -0.1
689,452 + +2.0
689,460 + +1.0
689,460 + +1.0
689,461 - -0.6
689,461 - +1.0
689,461 - -1.2
689,461 - +2.0
689,466 + -0.6
690,059 + Psest_0635 0.27 +1.0
690,279 + Psest_0635 0.37 -0.5
690,836 + Psest_0635 0.63 -0.0
690,836 + Psest_0635 0.63 +1.0
690,836 + Psest_0635 0.63 +1.0
690,836 + Psest_0635 0.63 -1.0
690,836 + Psest_0635 0.63 -1.0
690,836 + Psest_0635 0.63 -0.0
690,836 + Psest_0635 0.63 -0.0
690,836 + Psest_0635 0.63 -0.0
690,836 + Psest_0635 0.63 -0.6
690,836 + Psest_0635 0.63 -0.0
690,836 + Psest_0635 0.63 +0.4
690,836 + Psest_0635 0.63 -0.0
690,836 + Psest_0635 0.63 +0.4
690,836 + Psest_0635 0.63 +0.4
690,836 + Psest_0635 0.63 -1.0
690,837 - Psest_0635 0.63 -0.0
690,837 - Psest_0635 0.63 +1.0
690,837 - Psest_0635 0.63 +1.0
690,837 - Psest_0635 0.63 -0.0
690,837 - Psest_0635 0.63 +0.4
690,837 - Psest_0635 0.63 +0.6
690,837 - Psest_0635 0.63 -0.0
690,837 - Psest_0635 0.63 +1.0
690,837 - Psest_0635 0.63 +1.0
690,837 - Psest_0635 0.63 +1.0
690,837 - Psest_0635 0.63 -0.0
690,837 - Psest_0635 0.63 +1.0
690,837 - Psest_0635 0.63 +0.3
690,837 - Psest_0635 0.63 -0.6
690,837 - Psest_0635 0.63 -0.0
690,837 - Psest_0635 0.63 +1.0
690,837 - Psest_0635 0.63 -1.3
690,837 - Psest_0635 0.63 +1.0
690,837 - Psest_0635 0.63 -0.0
690,840 + Psest_0635 0.63 +0.1
690,840 + Psest_0635 0.63 +0.4
690,841 - Psest_0635 0.63 +1.0
690,841 - Psest_0635 0.63 +1.0
690,868 + Psest_0635 0.64 +2.0
690,868 + Psest_0635 0.64 +1.0
690,869 - Psest_0635 0.64 +1.0
691,210 - Psest_0635 0.80 -0.6
691,362 + Psest_0635 0.87 -1.0
691,362 + Psest_0635 0.87 -1.5
691,362 + Psest_0635 0.87 -1.3
691,363 - Psest_0635 0.87 -1.8
691,363 - Psest_0635 0.87 +0.4
691,363 - Psest_0635 0.87 -0.6
691,530 + -0.0
691,530 + +1.6
691,530 + +0.0
691,531 - -1.6
691,531 - -0.9
691,531 - +0.4
691,636 - +1.0
691,845 + Psest_0636 0.25 -0.3
691,846 - Psest_0636 0.25 -0.6
691,956 + Psest_0636 0.39 -0.6
691,956 + Psest_0636 0.39 +1.1
691,956 + Psest_0636 0.39 -1.8
691,957 - Psest_0636 0.39 -0.2
691,957 - Psest_0636 0.39 -0.2
692,024 - Psest_0636 0.47 -0.6
692,037 + Psest_0636 0.49 -0.6
692,038 - Psest_0636 0.49 -0.0
692,065 + Psest_0636 0.52 -0.0
692,065 + Psest_0636 0.52 -2.5
692,065 + Psest_0636 0.52 -1.2
692,065 + Psest_0636 0.52 +1.0
692,066 - Psest_0636 0.52 +0.6
692,066 - Psest_0636 0.52 -0.0
692,083 + Psest_0636 0.54 -0.1
692,084 - Psest_0636 0.54 +1.2
692,155 - Psest_0636 0.63 -1.0
692,155 - Psest_0636 0.63 -0.6
692,155 - Psest_0636 0.63 -0.3
692,265 + Psest_0636 0.77 -1.0
692,265 + Psest_0636 0.77 -0.4
692,265 + Psest_0636 0.77 -1.0
692,265 + Psest_0636 0.77 +0.4
692,266 - Psest_0636 0.77 +0.5
692,266 - Psest_0636 0.77 +2.6
692,266 - Psest_0636 0.77 +0.4
692,266 - Psest_0636 0.77 +1.0
692,286 + Psest_0636 0.79 -2.4
692,286 + Psest_0636 0.79 -1.0
692,370 + Psest_0636 0.89 -0.0
692,483 + -2.3
692,485 + -0.8
692,493 + +1.6
692,493 + +0.6
692,493 + +1.0
692,493 + -0.0
692,493 + -0.4
692,493 + -0.2
692,493 + +0.7
692,493 + -2.0
692,493 + -0.3
692,493 + +1.0
692,493 + -1.7
692,493 + -1.8
692,493 + -0.0
692,493 + -2.3
692,493 + -0.9
692,493 + -1.2
692,493 + +0.3
692,493 + -0.6
692,493 + -0.2
692,493 + -0.8
692,493 + -2.9
692,494 - +0.5
692,494 - -0.2
692,494 - +0.2
692,494 - -0.0
692,494 - -0.2
692,494 - +0.1
692,552 + +1.0
692,552 + -0.8
692,552 + -0.3
692,553 - +0.2
692,553 - +1.0
692,553 - -0.6
692,567 + -0.5
692,568 - -0.3

Or see this region's nucleotide sequence