Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0631 and Psest_0632 overlap by 4 nucleotides Psest_0632 and Psest_0633 are separated by 0 nucleotides
Psest_0631: Psest_0631 - Site-specific recombinase XerD, at 682,953 to 684,428
_0631
Psest_0632: Psest_0632 - hypothetical protein, at 684,425 to 685,033
_0632
Psest_0633: Psest_0633 - Phage integrase family., at 685,034 to 687,130
_0633
Position (kb) 684
685
686 Strain fitness (log2 ratio) -1
0
1
2 at 683.558 kb on - strand, within Psest_0631 at 683.611 kb on + strand, within Psest_0631 at 683.670 kb on - strand, within Psest_0631 at 683.674 kb on - strand, within Psest_0631 at 683.674 kb on - strand, within Psest_0631 at 683.810 kb on + strand, within Psest_0631 at 683.811 kb on - strand, within Psest_0631 at 683.811 kb on - strand, within Psest_0631 at 683.811 kb on - strand, within Psest_0631 at 683.856 kb on + strand, within Psest_0631 at 683.857 kb on - strand, within Psest_0631 at 684.091 kb on - strand, within Psest_0631 at 684.134 kb on + strand, within Psest_0631 at 684.135 kb on - strand, within Psest_0631 at 684.169 kb on - strand, within Psest_0631 at 684.190 kb on + strand, within Psest_0631 at 684.228 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.261 kb on + strand, within Psest_0631 at 684.274 kb on + strand, within Psest_0631 at 684.275 kb on - strand, within Psest_0631 at 684.350 kb on + strand at 684.368 kb on - strand at 684.390 kb on - strand at 684.390 kb on - strand at 684.398 kb on + strand at 684.521 kb on - strand, within Psest_0632 at 684.558 kb on - strand, within Psest_0632 at 684.577 kb on + strand, within Psest_0632 at 684.578 kb on - strand, within Psest_0632 at 684.675 kb on - strand, within Psest_0632 at 684.675 kb on - strand, within Psest_0632 at 684.854 kb on + strand, within Psest_0632 at 684.921 kb on - strand, within Psest_0632 at 685.069 kb on + strand at 685.180 kb on + strand at 685.206 kb on - strand at 685.215 kb on - strand at 685.310 kb on - strand, within Psest_0633 at 685.679 kb on + strand, within Psest_0633 at 685.806 kb on - strand, within Psest_0633 at 685.826 kb on - strand, within Psest_0633 at 685.827 kb on + strand, within Psest_0633 at 685.878 kb on + strand, within Psest_0633 at 685.928 kb on + strand, within Psest_0633 at 685.928 kb on + strand, within Psest_0633 at 685.928 kb on + strand, within Psest_0633 at 685.928 kb on + strand, within Psest_0633 at 685.929 kb on - strand, within Psest_0633 at 685.986 kb on - strand, within Psest_0633 at 685.999 kb on + strand, within Psest_0633 at 686.000 kb on - strand, within Psest_0633
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 683,558 - Psest_0631 0.41 +2.6 683,611 + Psest_0631 0.45 -0.8 683,670 - Psest_0631 0.49 -1.2 683,674 - Psest_0631 0.49 +0.6 683,674 - Psest_0631 0.49 +1.0 683,810 + Psest_0631 0.58 -0.8 683,811 - Psest_0631 0.58 +1.0 683,811 - Psest_0631 0.58 +2.0 683,811 - Psest_0631 0.58 -1.2 683,856 + Psest_0631 0.61 +1.0 683,857 - Psest_0631 0.61 -0.2 684,091 - Psest_0631 0.77 +0.5 684,134 + Psest_0631 0.80 -0.5 684,135 - Psest_0631 0.80 +0.2 684,169 - Psest_0631 0.82 +1.6 684,190 + Psest_0631 0.84 -0.2 684,228 + Psest_0631 0.86 -0.0 684,261 + Psest_0631 0.89 -1.0 684,261 + Psest_0631 0.89 +0.4 684,261 + Psest_0631 0.89 +1.5 684,261 + Psest_0631 0.89 +0.1 684,261 + Psest_0631 0.89 +0.3 684,274 + Psest_0631 0.89 +0.4 684,275 - Psest_0631 0.90 -0.6 684,350 + -0.0 684,368 - +0.5 684,390 - +0.3 684,390 - -1.0 684,398 + -0.0 684,521 - Psest_0632 0.16 -0.6 684,558 - Psest_0632 0.22 -0.0 684,577 + Psest_0632 0.25 -1.5 684,578 - Psest_0632 0.25 -0.0 684,675 - Psest_0632 0.41 -0.0 684,675 - Psest_0632 0.41 -0.3 684,854 + Psest_0632 0.70 -0.6 684,921 - Psest_0632 0.81 -0.6 685,069 + -0.0 685,180 + -1.6 685,206 - -1.6 685,215 - +0.5 685,310 - Psest_0633 0.13 +0.7 685,679 + Psest_0633 0.31 -0.4 685,806 - Psest_0633 0.37 +1.0 685,826 - Psest_0633 0.38 -0.6 685,827 + Psest_0633 0.38 -0.4 685,878 + Psest_0633 0.40 +0.2 685,928 + Psest_0633 0.43 -1.3 685,928 + Psest_0633 0.43 -0.0 685,928 + Psest_0633 0.43 -0.0 685,928 + Psest_0633 0.43 -0.6 685,929 - Psest_0633 0.43 +1.0 685,986 - Psest_0633 0.45 -0.0 685,999 + Psest_0633 0.46 +0.2 686,000 - Psest_0633 0.46 +0.4
Or see this region's nucleotide sequence