Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0573 and Psest_0574 are separated by 25 nucleotides Psest_0574 and Psest_0575 are separated by 156 nucleotides Psest_0575 and Psest_0576 are separated by 27 nucleotides
Psest_0573: Psest_0573 - cation diffusion facilitator family transporter, at 627,631 to 628,521
_0573
Psest_0574: Psest_0574 - hypothetical protein, at 628,547 to 628,963
_0574
Psest_0575: Psest_0575 - HrpA-like helicases, at 629,120 to 629,584
_0575
Psest_0576: Psest_0576 - hypothetical protein, at 629,612 to 630,211
_0576
Position (kb) 628
629 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 627.804 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.950 kb on + strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 627.951 kb on - strand, within Psest_0573 at 628.055 kb on + strand, within Psest_0573 at 628.115 kb on + strand, within Psest_0573 at 628.116 kb on - strand, within Psest_0573 at 628.492 kb on - strand at 628.533 kb on - strand at 628.731 kb on + strand, within Psest_0574 at 628.732 kb on - strand, within Psest_0574 at 628.732 kb on - strand, within Psest_0574 at 628.749 kb on + strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.750 kb on - strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.803 kb on + strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.804 kb on - strand, within Psest_0574 at 628.836 kb on - strand, within Psest_0574 at 628.836 kb on - strand, within Psest_0574 at 628.957 kb on + strand at 628.957 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.992 kb on + strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.993 kb on - strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.994 kb on + strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 628.995 kb on - strand at 629.092 kb on - strand at 629.092 kb on - strand at 629.092 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.094 kb on - strand at 629.130 kb on + strand at 629.131 kb on - strand at 629.131 kb on - strand at 629.131 kb on - strand at 629.131 kb on - strand at 629.135 kb on - strand at 629.135 kb on - strand at 629.508 kb on + strand, within Psest_0575 at 629.583 kb on - strand at 629.583 kb on - strand at 629.604 kb on - strand at 629.604 kb on - strand at 629.710 kb on + strand, within Psest_0576 at 629.710 kb on + strand, within Psest_0576 at 629.731 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.757 kb on + strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.758 kb on - strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.760 kb on + strand, within Psest_0576 at 629.761 kb on - strand, within Psest_0576 at 629.770 kb on + strand, within Psest_0576 at 629.771 kb on - strand, within Psest_0576 at 629.783 kb on + strand, within Psest_0576 at 629.783 kb on + strand, within Psest_0576 at 629.819 kb on + strand, within Psest_0576 at 629.819 kb on + strand, within Psest_0576 at 629.820 kb on - strand, within Psest_0576 at 629.820 kb on - strand, within Psest_0576 at 629.866 kb on + strand, within Psest_0576 at 629.867 kb on - strand, within Psest_0576 at 629.880 kb on + strand, within Psest_0576 at 629.880 kb on + strand, within Psest_0576 at 629.881 kb on - strand, within Psest_0576 at 629.945 kb on + strand, within Psest_0576 at 629.945 kb on + strand, within Psest_0576 at 629.946 kb on - strand, within Psest_0576 at 629.946 kb on - strand, within Psest_0576
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 627,804 + Psest_0573 0.19 -0.0 627,950 + Psest_0573 0.36 +0.4 627,950 + Psest_0573 0.36 +0.4 627,950 + Psest_0573 0.36 +1.0 627,950 + Psest_0573 0.36 +0.4 627,950 + Psest_0573 0.36 -0.0 627,950 + Psest_0573 0.36 +1.6 627,951 - Psest_0573 0.36 -0.4 627,951 - Psest_0573 0.36 +1.0 627,951 - Psest_0573 0.36 +1.0 627,951 - Psest_0573 0.36 +1.5 627,951 - Psest_0573 0.36 -0.7 627,951 - Psest_0573 0.36 -0.0 627,951 - Psest_0573 0.36 +0.8 628,055 + Psest_0573 0.48 +1.0 628,115 + Psest_0573 0.54 +0.3 628,116 - Psest_0573 0.54 +0.7 628,492 - -1.4 628,533 - -0.5 628,731 + Psest_0574 0.44 -0.4 628,732 - Psest_0574 0.44 -0.6 628,732 - Psest_0574 0.44 -1.4 628,749 + Psest_0574 0.48 -0.6 628,750 - Psest_0574 0.49 +1.0 628,750 - Psest_0574 0.49 -0.8 628,750 - Psest_0574 0.49 +0.6 628,750 - Psest_0574 0.49 -1.6 628,750 - Psest_0574 0.49 +1.0 628,803 + Psest_0574 0.61 +1.6 628,803 + Psest_0574 0.61 -1.1 628,803 + Psest_0574 0.61 -2.5 628,803 + Psest_0574 0.61 +1.0 628,803 + Psest_0574 0.61 -0.6 628,804 - Psest_0574 0.62 +0.6 628,804 - Psest_0574 0.62 +1.0 628,804 - Psest_0574 0.62 -0.0 628,804 - Psest_0574 0.62 -1.2 628,804 - Psest_0574 0.62 -1.4 628,804 - Psest_0574 0.62 -0.6 628,804 - Psest_0574 0.62 -1.0 628,804 - Psest_0574 0.62 -2.6 628,804 - Psest_0574 0.62 +1.0 628,804 - Psest_0574 0.62 -1.7 628,804 - Psest_0574 0.62 -1.8 628,804 - Psest_0574 0.62 -0.4 628,836 - Psest_0574 0.69 +0.7 628,836 - Psest_0574 0.69 -0.0 628,957 + +1.0 628,957 + -1.0 628,992 + -0.0 628,992 + -0.0 628,992 + -0.0 628,992 + +0.4 628,992 + -0.6 628,992 + +1.0 628,992 + -0.6 628,992 + -1.6 628,992 + -2.0 628,992 + +1.0 628,992 + +1.0 628,992 + -0.0 628,992 + -0.6 628,992 + -0.0 628,992 + -0.0 628,992 + +2.6 628,992 + +1.0 628,992 + -1.4 628,993 - -0.0 628,993 - +2.0 628,993 - +0.6 628,993 - +0.4 628,993 - -1.8 628,993 - +1.0 628,993 - -0.0 628,993 - -0.6 628,993 - -0.6 628,994 + -0.6 628,994 + -0.0 628,994 + -0.6 628,994 + +1.0 628,994 + +1.0 628,994 + -0.6 628,994 + +1.0 628,994 + -0.0 628,994 + -2.0 628,994 + +1.6 628,994 + +1.0 628,994 + -0.0 628,994 + +1.6 628,994 + -0.4 628,994 + -1.4 628,994 + +2.6 628,994 + +2.0 628,994 + -0.3 628,994 + -0.0 628,994 + -0.0 628,994 + -0.0 628,995 - +1.0 628,995 - -0.3 628,995 - -0.0 628,995 - -1.0 628,995 - -0.6 628,995 - -1.8 628,995 - -0.3 628,995 - -1.1 628,995 - +1.3 628,995 - -0.6 628,995 - +1.0 628,995 - +1.0 628,995 - -1.4 628,995 - -0.6 628,995 - +0.2 628,995 - -0.0 628,995 - -0.0 628,995 - -1.4 628,995 - -0.8 628,995 - -0.0 628,995 - -0.6 628,995 - -1.6 628,995 - -0.0 628,995 - +0.3 628,995 - +1.0 628,995 - -1.0 628,995 - +1.0 628,995 - -0.3 628,995 - +2.0 628,995 - +2.0 628,995 - -0.2 628,995 - -2.0 628,995 - -1.8 629,092 - -1.4 629,092 - +1.4 629,092 - -0.6 629,094 - +0.2 629,094 - -1.4 629,094 - -1.6 629,094 - +0.4 629,094 - +0.6 629,130 + +1.0 629,131 - -0.1 629,131 - -1.0 629,131 - -0.0 629,131 - +0.6 629,135 - -1.4 629,135 - -1.4 629,508 + Psest_0575 0.83 +0.3 629,583 - +0.6 629,583 - -1.0 629,604 - -0.2 629,604 - -0.6 629,710 + Psest_0576 0.16 -0.0 629,710 + Psest_0576 0.16 +0.0 629,731 + Psest_0576 0.20 -2.0 629,757 + Psest_0576 0.24 -0.1 629,757 + Psest_0576 0.24 +0.9 629,757 + Psest_0576 0.24 +0.2 629,757 + Psest_0576 0.24 -0.0 629,757 + Psest_0576 0.24 -0.0 629,757 + Psest_0576 0.24 -0.4 629,757 + Psest_0576 0.24 -0.4 629,757 + Psest_0576 0.24 -0.2 629,757 + Psest_0576 0.24 -1.0 629,758 - Psest_0576 0.24 -0.0 629,758 - Psest_0576 0.24 +1.0 629,758 - Psest_0576 0.24 -0.6 629,758 - Psest_0576 0.24 -0.0 629,758 - Psest_0576 0.24 +1.0 629,758 - Psest_0576 0.24 -1.0 629,758 - Psest_0576 0.24 +1.0 629,758 - Psest_0576 0.24 -1.0 629,760 + Psest_0576 0.25 +1.0 629,760 + Psest_0576 0.25 -0.1 629,760 + Psest_0576 0.25 -0.0 629,760 + Psest_0576 0.25 -1.4 629,760 + Psest_0576 0.25 -0.0 629,760 + Psest_0576 0.25 +0.0 629,760 + Psest_0576 0.25 +0.1 629,761 - Psest_0576 0.25 -0.7 629,770 + Psest_0576 0.26 +0.2 629,771 - Psest_0576 0.27 -0.8 629,783 + Psest_0576 0.28 -0.4 629,783 + Psest_0576 0.28 -0.7 629,819 + Psest_0576 0.34 -0.8 629,819 + Psest_0576 0.34 +0.1 629,820 - Psest_0576 0.35 -1.0 629,820 - Psest_0576 0.35 -0.7 629,866 + Psest_0576 0.42 +1.1 629,867 - Psest_0576 0.42 +1.0 629,880 + Psest_0576 0.45 -0.2 629,880 + Psest_0576 0.45 -0.4 629,881 - Psest_0576 0.45 +1.0 629,945 + Psest_0576 0.56 -0.6 629,945 + Psest_0576 0.56 +3.0 629,946 - Psest_0576 0.56 +1.0 629,946 - Psest_0576 0.56 +0.5
Or see this region's nucleotide sequence