Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4279

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,468,991	+				-0.2
4,468,991	+				+0.9
4,468,991	+				+0.4
4,468,992	-				+1.5
4,468,992	-				-3.3
4,469,536	+		Psest_4278	0.59	-0.9
4,469,707	-		Psest_4278	0.80	-0.0
4,469,716	+		Psest_4278	0.81	+0.8
4,469,716	+		Psest_4278	0.81	-0.3
4,469,717	-		Psest_4278	0.81	-0.1
4,469,878	+				-0.2
4,469,911	+				-0.3
4,469,911	+				-1.1
4,469,911	+				-0.9
4,469,912	-				+0.2
4,469,945	-				-0.0
4,470,110	+		Psest_4279	0.19	-0.9
4,470,111	-		Psest_4279	0.20	+0.5
4,470,139	+		Psest_4279	0.22	-0.1
4,470,139	+		Psest_4279	0.22	+1.2
4,470,139	+		Psest_4279	0.22	+0.1
4,470,139	+		Psest_4279	0.22	-0.1
4,470,140	-		Psest_4279	0.22	-0.5
4,470,140	-		Psest_4279	0.22	-0.6
4,470,140	-		Psest_4279	0.22	+0.6
4,470,140	-		Psest_4279	0.22	-0.9
4,470,140	-		Psest_4279	0.22	-1.0
4,470,140	-		Psest_4279	0.22	-0.0
4,470,140	-		Psest_4279	0.22	+0.3
4,470,140	-		Psest_4279	0.22	-1.3
4,470,166	+		Psest_4279	0.24	-2.1
4,470,274	+		Psest_4279	0.33	-0.9
4,470,513	+		Psest_4279	0.52	-0.6
4,470,702	+		Psest_4279	0.67	-0.4
4,470,703	-		Psest_4279	0.67	-0.0
4,470,703	-		Psest_4279	0.67	+0.5
4,470,712	-		Psest_4279	0.67	-0.6
4,470,865	-		Psest_4279	0.80	-0.2
4,470,913	+		Psest_4279	0.83	-1.7
4,470,913	+		Psest_4279	0.83	-0.8
4,470,913	+		Psest_4279	0.83	-0.1
4,470,913	+		Psest_4279	0.83	-1.7
4,471,145	+				-1.4
4,471,145	+				-0.4
4,471,145	+				-0.1
4,471,145	+				-0.9
4,471,146	-				-0.5
4,471,146	-				+0.0
4,471,146	-				-1.6
4,471,215	+				-0.6
4,471,237	-				+1.5
4,471,237	-				-0.9
4,471,265	+				-1.0
4,471,266	-				-0.3
4,471,266	-				+0.8
4,471,329	+				+0.8
4,471,329	+				-2.0
4,471,329	+				+0.6
4,471,330	-				-1.0
4,471,330	-				-0.6
4,471,330	-				+0.6
4,471,330	-				+0.0
4,471,330	-				+1.2
4,471,781	+		Psest_4280	0.51	+0.4
4,471,909	+		Psest_4280	0.65	+0.2
4,471,910	-		Psest_4280	0.65	-1.1
4,472,021	+		Psest_4280	0.77	+0.7
4,472,022	-		Psest_4280	0.77	-0.7
4,472,022	-		Psest_4280	0.77	+0.3
4,472,087	+		Psest_4280	0.84	+0.6