Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4165

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,343,708	+				+0.2
4,343,708	+				+0.2
4,343,708	+				+0.2
4,343,708	+				+0.2
4,343,708	+				-0.8
4,343,708	+				-1.6
4,343,708	+				-0.6
4,343,708	+				-1.4
4,343,708	+				-0.4
4,343,708	+				+0.4
4,343,708	+				-1.4
4,343,709	-				+1.2
4,343,709	-				+0.3
4,343,709	-				+0.6
4,343,709	-				+0.2
4,343,709	-				-0.6
4,343,709	-				-0.1
4,343,709	-				-0.4
4,343,727	-		Psest_4163	0.13	+0.2
4,343,747	+		Psest_4163	0.19	+0.2
4,343,747	+		Psest_4163	0.19	-0.0
4,343,748	-		Psest_4163	0.19	+0.4
4,344,099	+		Psest_4164	0.28	-0.4
4,344,099	+		Psest_4164	0.28	+0.6
4,344,099	+		Psest_4164	0.28	+1.4
4,344,100	-		Psest_4164	0.29	-0.5
4,344,100	-		Psest_4164	0.29	+1.9
4,344,109	-		Psest_4164	0.31	+0.2
4,344,109	-		Psest_4164	0.31	-1.8
4,344,115	-		Psest_4164	0.32	-0.4
4,344,137	+		Psest_4164	0.38	+2.5
4,344,137	+		Psest_4164	0.38	+0.4
4,344,138	-		Psest_4164	0.38	+0.6
4,344,303	+		Psest_4164	0.80	+0.5
4,344,304	-		Psest_4164	0.80	+0.9
4,344,357	+				+0.2
4,344,357	+				+1.1
4,344,357	+				-0.2
4,344,357	+				-0.4
4,344,357	+				-0.1
4,344,358	-				+1.2
4,344,375	+				+0.2
4,344,375	+				+0.9
4,344,375	+				-0.6
4,344,375	+				+0.9
4,344,375	+				-1.0
4,344,376	-				-0.6
4,344,376	-				-0.8
4,344,458	+				-0.4
4,344,471	-				+1.4
4,344,569	+		Psest_4165	0.15	+1.2
4,344,570	-		Psest_4165	0.15	+0.3
4,344,570	-		Psest_4165	0.15	+0.8
4,345,065	+		Psest_4165	0.54	-0.4
4,345,066	-		Psest_4165	0.54	-0.8
4,345,092	+		Psest_4165	0.56	+1.0
4,345,092	+		Psest_4165	0.56	+0.3
4,345,093	-		Psest_4165	0.56	+1.8
4,345,101	+		Psest_4165	0.57	-0.6
4,345,262	+		Psest_4165	0.69	+0.7
4,345,262	+		Psest_4165	0.69	-0.5
4,345,262	+		Psest_4165	0.69	+0.5
4,345,263	-		Psest_4165	0.69	-0.1
4,345,370	+		Psest_4165	0.78	+1.0
4,345,370	+		Psest_4165	0.78	+1.2
4,345,370	+		Psest_4165	0.78	+0.4
4,345,370	+		Psest_4165	0.78	+0.0
4,345,370	+		Psest_4165	0.78	+0.5
4,345,371	-		Psest_4165	0.78	-0.5
4,345,371	-		Psest_4165	0.78	+0.6
4,345,371	-		Psest_4165	0.78	-0.5
4,345,371	-		Psest_4165	0.78	-1.1
4,345,371	-		Psest_4165	0.78	+1.7
4,345,379	+		Psest_4165	0.79	-0.7
4,345,380	-		Psest_4165	0.79	+1.2
4,345,380	-		Psest_4165	0.79	+0.2
4,345,421	+		Psest_4165	0.82	+1.5
4,345,550	+				-0.8
4,345,550	+				-0.4
4,345,550	+				+0.4
4,345,550	+				-0.7
4,345,550	+				+0.2
4,345,550	+				+0.1
4,345,551	-				+1.2
4,345,551	-				-0.4
4,345,551	-				+0.1
4,345,551	-				+0.6
4,345,551	-				+2.2
4,345,551	-				-0.2
4,345,551	-				-0.4
4,345,551	-				+0.3
4,345,598	+				+2.2
4,345,598	+				-0.1
4,345,599	-				-0.8
4,345,599	-				-0.1
4,345,599	-				-1.2
4,345,628	-				+0.6
4,345,631	+				+0.0
4,345,631	+				-0.0
4,345,632	-				+0.6
4,345,632	-				-0.8
4,345,632	-				+0.8
4,345,632	-				-0.6
4,345,642	+				+1.0
4,345,642	+				-0.1
4,345,643	-				+0.1
4,345,765	+				-1.1
4,345,766	-				-0.1
4,345,865	+				-0.7
4,345,865	+				-0.2
4,346,107	+				-0.1
4,346,107	+				-0.5
4,346,126	+				-0.3
4,346,126	+				+1.8
4,346,126	+				-0.8
4,346,126	+				-0.1
4,346,126	+				+0.7
4,346,126	+				+0.6
4,346,126	+				+0.1
4,346,126	+				+0.2
4,346,126	+				+0.5
4,346,127	-				+0.1
4,346,127	-				+1.2
4,346,127	-				-1.5
4,346,127	-				+0.6
4,346,142	-				+1.5
4,346,437	+		Psest_4166	0.71	+0.7
4,346,437	+		Psest_4166	0.71	-1.1
4,346,437	+		Psest_4166	0.71	-0.7
4,346,438	-		Psest_4166	0.72	+0.7
4,346,438	-		Psest_4166	0.72	+1.2
4,346,438	-		Psest_4166	0.72	+2.1
4,346,438	-		Psest_4166	0.72	-0.8
4,346,438	-		Psest_4166	0.72	+2.2
4,346,498	+		Psest_4166	0.85	+0.1
4,346,498	+		Psest_4166	0.85	-1.0
4,346,498	+		Psest_4166	0.85	-0.2
4,346,498	+		Psest_4166	0.85	+1.0
4,346,499	-		Psest_4166	0.85	+1.0
4,346,499	-		Psest_4166	0.85	+0.6
4,346,499	-		Psest_4166	0.85	+0.2
4,346,581	+				-1.0