Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4159

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,339,525	+				+0.1
4,339,526	-				+0.1
4,339,526	-				-0.0
4,339,561	+				+0.2
4,339,561	+				-1.3
4,339,585	+				+0.9
4,339,662	+		Psest_4158	0.18	+1.4
4,339,663	-		Psest_4158	0.18	-0.4
4,340,578	+		Psest_4159	0.17	+1.6
4,340,578	+		Psest_4159	0.17	+0.2
4,340,578	+		Psest_4159	0.17	+0.7
4,340,578	+		Psest_4159	0.17	+1.6
4,340,579	-		Psest_4159	0.17	+0.6
4,340,579	-		Psest_4159	0.17	+0.2
4,340,579	-		Psest_4159	0.17	-0.6
4,340,579	-		Psest_4159	0.17	+0.3
4,340,579	-		Psest_4159	0.17	+0.2
4,340,582	+		Psest_4159	0.17	-0.2
4,340,582	+		Psest_4159	0.17	-0.4
4,340,582	+		Psest_4159	0.17	+1.6
4,340,583	-		Psest_4159	0.17	+0.2
4,340,656	-		Psest_4159	0.26	+1.2
4,340,680	+		Psest_4159	0.28	+1.4
4,341,057	+		Psest_4159	0.72	-0.2
4,341,058	-		Psest_4159	0.72	-0.7
4,341,058	-		Psest_4159	0.72	-0.5
4,341,058	-		Psest_4159	0.72	-0.6
4,341,058	-		Psest_4159	0.72	-1.0
4,341,105	+		Psest_4159	0.77	+1.2
4,341,105	+		Psest_4159	0.77	+0.9
4,341,105	+		Psest_4159	0.77	+0.4
4,341,106	-		Psest_4159	0.77	+0.4
4,341,106	-		Psest_4159	0.77	+0.8
4,341,290	+				-0.4
4,341,290	+				-0.1
4,341,290	+				+1.6
4,341,290	+				+0.2
4,341,290	+				+1.4
4,341,291	-				-0.9
4,341,293	+				+1.2
4,341,293	+				-0.3
4,341,293	+				+1.2
4,341,293	+				-0.8
4,341,293	+				-0.2
4,341,293	+				+0.2
4,341,293	+				+0.5
4,341,294	-				-0.1
4,341,294	-				+0.8
4,341,294	-				-1.0
4,341,294	-				-0.8
4,341,310	+				+1.6
4,341,433	+		Psest_4160	0.17	-0.9
4,341,433	+		Psest_4160	0.17	+0.9
4,341,434	-		Psest_4160	0.17	+0.7
4,341,434	-		Psest_4160	0.17	+0.4
4,341,434	-		Psest_4160	0.17	+0.5
4,341,434	-		Psest_4160	0.17	-0.7
4,341,436	+		Psest_4160	0.17	+0.2
4,341,620	-		Psest_4160	0.42	+0.5
4,341,949	+		Psest_4160	0.87	+0.4
4,341,949	+		Psest_4160	0.87	-1.4
4,341,950	-		Psest_4160	0.87	+0.3
4,341,950	-		Psest_4160	0.87	+0.6
4,341,950	-		Psest_4160	0.87	-1.3
4,341,950	-		Psest_4160	0.87	-0.6
4,341,988	-				+1.2
4,341,988	-				+0.8
4,342,015	+				+2.2
4,342,018	+				+0.0
4,342,018	+				+0.6
4,342,019	-				+0.2
4,342,056	+				+2.2
4,342,057	-				+0.1
4,342,082	+				+2.2
4,342,083	-				-2.3
4,342,083	-				-1.6
4,342,083	-				-0.1
4,342,083	-				+0.9
4,342,083	-				+0.2
4,342,083	-				-0.2
4,342,206	+		Psest_4161	0.34	-0.1
4,342,206	+		Psest_4161	0.34	+1.2
4,342,206	+		Psest_4161	0.34	+1.2
4,342,207	-		Psest_4161	0.34	-0.6
4,342,207	-		Psest_4161	0.34	-0.6
4,342,207	-		Psest_4161	0.34	+1.2
4,342,302	+		Psest_4161	0.55	+0.2